Hydrogenobaculum sp. HO: HydHO_0406
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Entry
HydHO_0406 CDS
T02482
Name
(GenBank) DNA polymerase III, epsilon subunit
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
hho
Hydrogenobaculum sp. HO
Pathway
hho03030
DNA replication
hho03430
Mismatch repair
hho03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HydHO_0406
03430 Mismatch repair
HydHO_0406
03440 Homologous recombination
HydHO_0406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hho03032
]
HydHO_0406
03400 DNA repair and recombination proteins [BR:
hho03400
]
HydHO_0406
Enzymes [BR:
hho01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HydHO_0406
DNA replication proteins [BR:
hho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HydHO_0406
DNA repair and recombination proteins [BR:
hho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HydHO_0406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DEDDh_C
RNase_H_2
DNA_pol_A_exo1
Rv2179c-like
DNApol_Exo
RH3_dom
Motif
Other DBs
NCBI-ProteinID:
AGG14739
LinkDB
All DBs
Position
complement(344782..345372)
Genome browser
AA seq
196 aa
AA seq
DB search
MYFSESFENDAYVVLDIETTGLNPDEHEIIEIFAFLVEKERITKQFHRLINPGFFIPRRI
TEITGITNAMLVGQPKVEEVIYDFDNFVKDYIIVGHNVKFDLSFLNKAYSIYLHKKLQSP
NICTLELSKKLIPNLKSYKLSAVADYFNIKYERLHRAKDDALLTYNIFNKLMDIIRRQYK
KELSYFYLKSLINSRI
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
atgtattttagcgaatcttttgagaatgacgcatacgtagttttagacatagaaaccacc
ggccttaatccagatgagcatgaaataatagagatttttgcctttttggtggaaaaagaa
agaatcacaaaacaatttcacagactcataaacccaggtttttttattccaagaaggata
acagaaataacaggcataacaaacgctatgctggtaggccaacccaaggttgaagaggtt
atatacgattttgacaactttgtaaaagactatatcatagtaggtcacaacgtaaaattt
gatttatcgtttttaaacaaagcttacagcatatatcttcataaaaaactacaatctcca
aatatctgcacccttgaactttccaaaaaactcatccctaacctaaaatcctacaaactt
tctgcagtagcagattactttaacataaaatacgaaagacttcacagagctaaagacgat
gctcttctaacttacaatatattcaataagttaatggatataataaggcgtcaatacaaa
aaagaattaagctatttttatcttaaaagcctcataaactcaaggatatag
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