Hydrogenobaculum sp. HO: HydHO_0978
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Entry
HydHO_0978 CDS
T02482
Name
(GenBank) RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG
KO
K02405
RNA polymerase sigma factor FliA
Organism
hho
Hydrogenobaculum sp. HO
Pathway
hho02020
Two-component system
hho02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hho00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HydHO_0978
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HydHO_0978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hho03021
]
HydHO_0978
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
hho02035
]
HydHO_0978
Transcription machinery [BR:
hho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HydHO_0978
Bacterial motility proteins [BR:
hho02035
]
Flagellar system
Flagellar assembly proteins
Stator
HydHO_0978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
GerE
HTH_23
Sigma70_ECF
TerB_C
Mob_Pre
DUF1492
DUF3853
HTH_17
Rv2175c_wHTH
MenC_N
HTH_10
Motif
Other DBs
NCBI-ProteinID:
AGG15293
UniProt:
M1QJ87
LinkDB
All DBs
Position
906699..907436
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AA seq
245 aa
AA seq
DB search
MSTSINKDFDIEKKEQREKKILEYIPLVKKICSKMSRNLPPSVDYNDLVSNGIIGLINAI
DHLDESKNPESYIKIRVKGAIYDYLRSLDFGSRNIRDKEHKIKEIIRAFQNEYQRDPTDE
EISSILGESLEEYQNSLYKISFSYLQSLEDMVYKITEENESSYDNFVTSSIETPEEHAVK
SDLAEKLKEAIDKLDEREKLVLQLLFYEELGIKEVADILGISLSRVSQIKSQALEKLRKH
LEETI
NT seq
738 nt
NT seq
+upstream
nt +downstream
nt
atgtccacaagcataaacaaagattttgatatagaaaaaaaagaacaacgagaaaagaaa
attttagaatatataccgcttgtaaaaaagatatgcagcaaaatgtcaagaaatttacca
ccaagcgtagattacaacgatttagttagtaacggcataataggacttataaacgctata
gaccatttagatgagtcaaaaaatccagagtcttatataaaaattagagtaaaaggggct
atttatgattaccttagaagtcttgattttggcagtagaaacataagagataaagagcat
aaaataaaagaaattataagagcctttcaaaacgagtatcaacgagatcctactgacgaa
gagataagtagcattttaggtgagagcttagaagagtatcaaaatagcctttataagata
tctttttcctatctacaaagtttagaagacatggtgtataaaataacagaagaaaatgaa
agttcatacgacaactttgtaacatcaagcattgaaaccccagaagaacatgcggtaaaa
tcagatttagcagagaagttaaaagaggctattgataagcttgacgagagagaaaagttg
gttttgcagcttttattttatgaagagcttggtataaaagaagtagcagatatcttagga
atatctttatcaagggtatctcagataaaatctcaagctctagaaaaattaaggaagcat
ttagaggaaactatatga
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