Hydrogenobaculum sp. HO: HydHO_1014
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Entry
HydHO_1014 CDS
T02482
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hho
Hydrogenobaculum sp. HO
Pathway
hho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HydHO_1014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hho03019
]
HydHO_1014
03016 Transfer RNA biogenesis [BR:
hho03016
]
HydHO_1014
Enzymes [BR:
hho01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HydHO_1014
Messenger RNA biogenesis [BR:
hho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HydHO_1014
Transfer RNA biogenesis [BR:
hho03016
]
Prokaryotic type
tRNA degradation factors
HydHO_1014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
Rrf2
RNase_II_C_S1
CSD
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AGG15329
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All DBs
Position
941923..944007
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AA seq
694 aa
AA seq
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MEKEEIVTAIESFLSSKKKPVSFGELAKHIPVDKKILRKVLRELIKQDKIITTKGHFSLN
RESIKKVVGVVEANPAGFGFLIPKDGSEDIYIPFFEMQKVFDKDEVEGYVVLYKGKEELR
IERVLKRARKEFVCSISNFKKCIANPVDENHFHDIELSKNQCKNIKPEQLVLVKITRYPT
KTQKAKGKIIEIIGNPSESFLSLELLKRKYNLKNQYPKEAIKELNSFLEKFDFQKEISRR
KDLRDQPCFTIDPVRAKDFDDAVYLEKEGDDYRLFVHIADVSLFVKFGSALDKEAYERGT
TVYLPGEAIHMLPEELSSNLCSLVPNEDRFCLSVEMVFDKSAKLKHYEIYESVINSKARL
TYDQALDIITGKIKPPLPSIRETLIEMENLYRKRHKIRWDLGSIDFDLPEAEIVIDETGE
PSAILPYERHIAHRIIEEFMVSANEVIATFMNEKSDLGFYRVHEKPNKDKVQNLLTILSG
LGYKTTMPDDFEPKFFQRIIEHFEGKEEEFLVRFLTLRSMQKAKYSPIDIGHFGLASKHY
THFTSPIRRYPDIIVHRIIKSILKKKPLAFNMSYLEEAAVHLSEKERLADKIEYEAIDFL
RARFMKDKIGEIFEGIITGIIQNGIFVQIKTILAEGFVSISFMEGDFIYDQENHRFIDAK
SHKTYRLGDSVKVKVIKVDEQKGKLDFEIVEEII
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaagaagagatagttactgctatagaaagttttctatcttctaagaaaaagcct
gtttctttcggcgaacttgccaagcatataccagtggataaaaagatacttaggaaggtt
ctaagagagttaatcaaacaagataaaatcatcaccaccaaaggacattttagcctaaac
agagaatctataaaaaaggtggtgggcgtcgtagaggcaaatccagcaggttttggattt
ttaataccaaaggatggttctgaagatatatacataccattttttgaaatgcaaaaagtg
tttgataaagacgaggtggaaggatatgtggtcctttacaaaggaaaagaagagctaaga
attgaaagggtcctaaaacgagccagaaaggagtttgtttgcagtatatcaaatttcaaa
aaatgcattgcaaatccagtagatgaaaaccactttcacgatatagaactttctaaaaac
caatgcaaaaatataaaaccagagcaacttgtacttgtaaaaataacaagatatcctaca
aagactcaaaaagccaaaggaaaaataattgaaataataggaaatccatctgagagcttc
ttgtctttggagcttttaaaaagaaaatacaacttaaaaaatcaatatccaaaagaagct
ataaaagagttaaactcgtttttagaaaaatttgattttcaaaaagagatatcaagacga
aaagacttaagagaccaaccttgttttaccatagacccagtaagagcaaaagactttgac
gatgcggtttatcttgaaaaagaaggtgatgactacaggctttttgtacatatagcagat
gtgtctttgtttgtaaaatttggaagcgcccttgacaaagaagcatacgaaagaggtacc
acagtttaccttccaggagaagctatacatatgcttccggaagagctatcctcaaacctt
tgtagccttgtgccaaatgaagacagattttgccttagcgttgaaatggtttttgataaa
agcgcaaaactaaaacattacgagatatatgaaagcgttataaactcaaaggcaaggctt
acctacgaccaagctttagatataataactggcaaaatcaagccaccacttccaagcata
agagaaacacttattgagatggaaaatctttatagaaaaagacataagataagatgggac
ttaggaagtatagactttgacctaccagaggccgagatcgtaatagacgaaacaggtgaa
ccaagcgctatactaccttacgaaagacatatagctcataggataatagaggaatttatg
gtatctgccaacgaagtgatagcaacattcatgaatgagaaatcagatttaggcttttac
agagttcatgaaaaaccaaataaagacaaagtccaaaatcttctaactatactatctggg
ctcggatacaaaactacaatgccagatgacttcgagccaaagttctttcagcggattata
gaacattttgaaggaaaagaggaggagtttttggtgagatttttaaccttaagaagcatg
caaaaagccaaatactcacccatagatatagggcactttggccttgcatcaaaacattat
acacactttacctctcccatcagaaggtatccagatatcatagtacatcggataataaaa
tccatcttaaagaaaaaacctttagcttttaatatgagctaccttgaagaagcggcagtg
catttgtctgaaaaagaacgtttggctgacaaaattgaatacgaagctatagatttccta
agggcaaggtttatgaaagataagataggagagatatttgaaggcattatcaccggtata
atacaaaacggtatcttcgtgcagataaaaaccatattggccgaagggtttgtaagcata
agttttatggaaggtgattttatctacgaccaagaaaatcacaggtttatagatgccaaa
agccataaaacttatagattgggagatagtgtaaaagtaaaagtcataaaagtagatgaa
caaaaaggaaaactagactttgagattgtagaagaaattatataa
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