Hydrogenobaculum sp. HO: HydHO_1205
Help
Entry
HydHO_1205 CDS
T02482
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN/SigL
KO
K03092
RNA polymerase sigma-54 factor
Organism
hho
Hydrogenobaculum sp. HO
Pathway
hho02020
Two-component system
hho02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hho00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HydHO_1205
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HydHO_1205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hho03021
]
HydHO_1205
Transcription machinery [BR:
hho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HydHO_1205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
LacI
Sigma54_AID
HTH_21
Arg_repressor
HTH_3
HTH_IclR
Sigma70_r4
HTH_Tnp_4
HTH_AraC
HTH_Tnp_ISL3
Motif
Other DBs
NCBI-ProteinID:
AGG15519
LinkDB
All DBs
Position
complement(1119933..1121120)
Genome browser
AA seq
395 aa
AA seq
DB search
MCPEGINLNQKLEIKIGLNLFFVLSQNVELLQDTATDLEQELKVEEKLNPFLKLKVLKPP
KKFFINKEDYTQNIAYSYSYKEHLIKAINEELEDIEKEIAKEIVYSLDSSGFISLETLED
IKNHFGVDWDVVDDARAFVMEIEPIGHGSLNPFEYMELQIRTYYKDKKEYIKYLKDLEER
KKIPKEAMEFFSSLKKTPIQIDKTNLLPSKVDIVIEIDQGEILYDIFDNYVDISQENIEE
SLEDKELERYLKQRARRFVEAINLRRKFLKELTKIVVERQQDFFLKDKPLKSLMLKDVAN
EFGISISTVSRLVNSKYVKTPKGVFKLRSFFVRESVSSKSQEEILNMIKKLIQNEETVYT
DKDIEEILRNYGINISRRTVAKYRAKLGIGSSRKR
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgtgtccagaaggtataaacctaaatcaaaagcttgaaattaaaataggtttaaaccta
ttttttgtactaagtcaaaatgttgagcttctacaagatactgcaacagatttagagcaa
gagcttaaagtagaagagaagctaaatccttttttaaaactaaaagtactaaaaccgccg
aaaaagttttttataaacaaagaagactacacccaaaatatagcttactcttactcttac
aaggagcatcttataaaggctataaatgaagagctagaggatatagaaaaagagatagcc
aaagaaatagtatattctctagatagcagtggttttatatctcttgagacgttagaggat
ataaaaaatcattttggcgtagattgggatgtcgtagatgatgccagagcttttgtgatg
gagatagagcccatagggcacggttctttaaatccttttgagtacatggaacttcagata
aggacttattacaaagacaagaaagagtatataaaatatttaaaagatttagaagaaaga
aaaaaaatacctaaagaggctatggagtttttctcaagtctcaaaaaaacacccattcag
atagataaaacaaaccttttaccctctaaagtggatatcgtaatagagatagatcaaggg
gagattttatacgatatatttgataactatgtagatatttctcaagaaaatatagaagag
agcttagaggacaaagagcttgaaagatatttaaaacaaagggctagaaggtttgtagaa
gccataaacttaagaaggaagtttctaaaagagcttacaaagattgttgtagaaagacaa
caagacttctttttaaaagataagcctcttaaaagcttgatgctaaaagatgtggcaaat
gagtttggtatttctatatccactgtttcaaggcttgtaaattcaaagtatgtaaaaacg
ccaaaaggggtatttaagctaagatctttttttgtgagagagagcgtatcctcaaaaagt
caagaggagatattaaacatgataaaaaaactcattcaaaacgaagaaactgtatatacc
gataaagatatagaagagatcttaagaaattacggtataaatatatcaaggcgcactgtg
gcaaagtatagggcaaaacttggtattggaagttcgaggaaaagatga
DBGET
integrated database retrieval system
