Hydrogenobaculum sp. HO: HydHO_1498
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Entry
HydHO_1498 CDS
T02482
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hho
Hydrogenobaculum sp. HO
Pathway
hho02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hho00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HydHO_1498
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hho03021
]
HydHO_1498
Transcription machinery [BR:
hho03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HydHO_1498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
DBD_HTH
CYP38_PsbQ-like
Motif
Other DBs
NCBI-ProteinID:
AGG15806
LinkDB
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Position
complement(1423713..1425449)
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AA seq
578 aa
AA seq
DB search
MGKAKGKDQLLEIGKEKGYVTYDDINEYVSEDLVESDELESLFDILSEKGIQILEDEAEA
AIHHEADEEILEEDDEMIVSASIVEADLKNNDSVRYYLKEMGKIALLGRADEIEHAKYIE
MGRKQLRRGLLRTSFLVDMVLRYWAKVCDGKMRSQEILDMQEEHTDYDEYEEAEHVDSVF
IEKGIELAKKYKTVIEKRTLFLTYKDKKTKAEYLKAHAEMNKTLKSINIKFSRYEKIADE
FIKLYKDYKSKLNSLTIQKRRFEAIHPNVEELLSYYDKNKELLNKIEKHMPFHTFEISRS
NYLALQREIEDIERRLGVLPEELNKIINIIEQGRKRVKESKDIMVKSNLRLVVSIAKKYI
NRGLHFLDLIQEGNMGLMKAVDKYDYKKGFKFSTYATWWIKQAITRAIADQAKTIRIPVH
MIETINKISKVSKKLFQEYGREPSPEEIAKALNMSPEKVRKILKSIQEPISLETPIGDDE
DTHLKDFIEDSSISNPEEATARRLLREQIEKIINTLSDKEREVIMYRFGLVDGIEHTLEQ
VGAMFNLTRERIRQIESKAIRKIRHPSRAKYLKDFEII
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaagccaaaggcaaagaccaacttttagaaatcggcaaagaaaaaggctacgta
acctacgacgacataaacgagtatgtcagtgaggacttggtagagtccgatgaattggag
tctttgtttgatatcttgtccgaaaaaggtatacagattttagaagatgaagctgaagcc
gctatacaccacgaagccgatgaagagattttagaagaagacgacgagatgatagtatct
gccagcatagtagaggcagatttaaagaacaacgattccgtaagatactatctaaaagag
atgggtaagatagctcttcttggaagagcagatgaaatagagcatgcaaaatacatagag
atgggtagaaagcaactaagaagagggctactaaggacatcttttttagtggatatggtg
ctaaggtattgggcaaaagtttgcgatggaaagatgagatctcaagagatacttgatatg
caggaagaacacacagactacgatgagtacgaagaagcagaacacgtagattctgtgttt
atagaaaaaggtatagaacttgccaaaaaatataaaacagtaatagaaaaaaggacgtta
tttttaacatacaaagataagaaaacaaaagcagaatatttaaaggctcatgcagagatg
aataaaacgttaaaaagtataaatatcaagttttcaagatatgaaaaaatagcggatgag
tttataaaactatacaaagactataagagcaaactaaattctttaactatacaaaaaaga
agatttgaagctatacatccaaacgtggaagaacttttatcttactacgataaaaacaaa
gaactactaaataaaatagaaaaacatatgccttttcatacttttgagataagcaggtca
aactacttagcccttcaaagggaaatagaggacatagaaagacgcttaggagtcttacca
gaagagcttaacaaaattataaacattatagaacaaggtagaaaacgcgtaaaagagtca
aaagacataatggtaaaatcaaacctaagactcgtagtatccatagctaaaaagtacata
aacagaggtcttcacttcttagaccttatacaagaaggcaatatgggacttatgaaagct
gttgataaatacgattataaaaaaggctttaaattttctacatacgccacgtggtggata
aaacaagctattacaagagctatagcagaccaagcaaaaaccatacgtataccagtacat
atgatagaaactatcaacaaaatttctaaagtatccaaaaaactatttcaagagtatggc
agagaaccatccccagaagaaatagcaaaagctctaaacatgtctccagaaaaagtaagg
aaaatactgaagtccattcaagagcctatatctcttgaaacacctataggagatgacgaa
gatacacatcttaaagattttatagaagattcaagcatatcaaacccagaggaagccaca
gccagaagacttctaagagagcaaatagaaaagatcataaacacactctcagataaagaa
agagaagtaattatgtataggtttggattggtagatggcatagagcacacgctggaacaa
gtgggggctatgtttaatcttaccagagaacgcataagacaaatagaatcaaaagctata
agaaagataagacatccaagcagggcaaagtatttaaaagattttgaaataatatga
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