Helicobacter pylori Shi112: HPSH112_01300
Help
Entry
HPSH112_01300 CDS
T02037
Name
(GenBank) type IV secretion system protein VirD4
Organism
hhp
Helicobacter pylori Shi112
Pathway
hhp03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
hhp00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
HPSH112_01300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
T4SS-DNA_transf
TraG-D_C
TrwB_AAD_bind
Motif
Other DBs
NCBI-ProteinID:
AFI00487
LinkDB
All DBs
Position
250643..252784
Genome browser
AA seq
713 aa
AA seq
DB search
MKMQFVKAFCVLFSILLIPLFFILANYYVFDAIKSFRQAYFFSQSVFIGLYKGASILDLK
FEVYITMIMSLMPLVATIYMSIQKTKETSHGYARWANVKDIECFKIFSKEGFCKVVHRLG
VQFDKGFILGKFGFPKLRDVCYDKPLGAMIVAPPGAGKTACVALPNLLTLPNSCIITDIK
GELRDKTAGYRQKFLNNRILIFNPYGDDNTCYFNPFDKRIVKPMNFDQRLRLVQENANNV
FISEEKGEDHWVSKAKDLFSFYALHDVCSKDETNFFDVAMGPNRDYVNLIDKRSRYYKQL
YQHDKKTGEIILDPQTNEPILIPNVNARKLWYLQVSEQKYADPKDPRNFDPNEPEPAPRS
EGALDEIVRNDARAWANSAEEEFASIISTFNRFVSVFKSNQVRIATSKMSFDYEELRTDN
ISLYIVIAQKDINTLAPLVRVILESIAKNLLTNESSKKEERIYMILDEFVRFGKLPFLLE
MPALCRSYNVVPLFITQDYAMIRKNYSDDDLKILKGVVHYNIVFKMNSAEDAEIVSKEVG
EFTRQSKNYSTEKGQLVFGGSSSYSHEGRNLLTAQDIMNIKSDEVIVIVTGAKATPLKLK
ANYWFRDKELLKRANLPIDLEVERKRFKESVQPTTSQKESENSNLTESEKDNENPTTSQE
KNKNENTEQENHNEIDEILKKPLSEISMEEKRALFKKMQQGDEQSEQEKDTQS
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgcaatttgtgaaagctttttgcgtgctttttagcattttacttatcccctta
ttttttatcttggcaaattattatgtttttgatgccataaagtcgtttagacaggcttat
ttcttttctcaaagcgtgtttatagggctttataagggagcgagtatcttagatttaaaa
tttgaagtctatatcactatgataatgtctttaatgcccttagtagctacgatttatatg
agtattcaaaagactaaagaaacttcgcatggctatgcgagatgggctaatgttaaagac
atagagtgctttaaaatctttagtaaagagggcttttgtaaggtagtgcatagattaggg
gtgcaatttgacaagggatttattctaggtaaatttggttttccaaaacttagagatgtg
tgttatgacaagcccttaggagccatgattgttgcaccacctggagctggtaaaaccgca
tgcgtggctttacccaatttattgactttgcctaatagctgtattatcactgatattaaa
ggcgaactaagagataagactgctggatatagacaaaaattcttaaacaataggatttta
atctttaatccctatggtgatgataatacttgttattttaatccttttgataaaaggatt
gtaaaacccatgaactttgaccaacgcctaagacttgtgcaagagaatgctaataatgtc
tttattagcgaagaaaagggcgaagaccattgggtatctaaagcgaaagatttgtttagc
ttttatgctttgcatgatgtttgttccaaagatgaaacaaacttttttgatgtggctatg
ggtccaaatagagactatgtcaatttaattgataaaagaagtcgctattacaaacagctc
tatcagcacgacaaaaagacaggcgaaattatcctagacccacaaactaatgagcctatt
ttaattcctaatgtgaatgcgagaaaattgtggtatttgcaagtttcagagcaaaaatac
gctgaccccaaagaccctagaaattttgacccaaatgagcctgaaccagcccctagaagt
gaaggggcgttagatgaaattgtaagaaatgatgcaagagcgtgggctaatagtgctgaa
gaagaatttgcaagtattatttctactttcaatcgctttgtgtctgtttttaaaagcaat
caagtaagaattgctacttctaaaatgagctttgattatgaagaattaagaacagacaat
atcagtctttatattgtgattgctcaaaaagacatcaacacgcttgcccccttagttaga
gtgattttagaaagtattgctaaaaacttactaactaatgaaagttctaaaaaagaagaa
cgcatttatatgattttagatgaatttgttagatttggtaagttgcctttcttgttagaa
atgcctgcactttgtcgctcttataatgtcgttcccttattcatcacgcaagattatgcg
atgattagaaaaaattatagcgatgatgatttgaaaatcttaaaaggcgtggtgcattat
aacattgtctttaagatgaatagtgctgaagatgctgagattgtttctaaggaagtgggc
gaattcactagacaatctaaaaattattctactgaaaagggtcagctagtctttggaggc
agttcttcttatagccatgagggtagaaatttactcacagctcaagacattatgaatata
aaatcagatgaagttattgtcattgttacaggagctaaagcgacccctttaaaacttaaa
gctaattattggtttagagataaagagcttttaaaaagagctaacttgcctattgattta
gaagtagaaagaaaaagatttaaagagtctgtgcaacccactacttcacaaaaagagagt
gaaaattcaaatctaacagaaagcgagaaagataatgaaaaccccactacttcacaagaa
aaaaacaagaatgaaaacacagagcaagaaaatcacaatgaaattgatgagattttaaaa
aagccactgagtgaaatcagcatggaagaaaaaagagccttatttaagaaaatgcaacaa
ggcgatgaacaaagcgagcaagagaaagacacccaaagttaa
DBGET
integrated database retrieval system
