Helicobacter pylori Shi112: HPSH112_01315
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Entry
HPSH112_01315 CDS
T02037
Name
(GenBank) topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hhp
Helicobacter pylori Shi112
Brite
KEGG Orthology (KO) [BR:
hhp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hhp03032
]
HPSH112_01315
03400 DNA repair and recombination proteins [BR:
hhp03400
]
HPSH112_01315
Enzymes [BR:
hhp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HPSH112_01315
DNA replication proteins [BR:
hhp03032
]
Prokaryotic type
DNA Topoisomerases
HPSH112_01315
DNA repair and recombination proteins [BR:
hhp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HPSH112_01315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim
DUF4364
Death_Lrrd1
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
AFI00490
LinkDB
All DBs
Position
261185..263245
Genome browser
AA seq
686 aa
AA seq
DB search
MKDSVIIIESPNKVAKIKEITGASVFATIGHFMQLKSYDEDNNFKPTFEYDPQKKKRIFE
IIEACKNKKVYIATDPDREGYAIGYHFYEKIKRIASSIYRAEFFEITPSGINKGLQNASL
FENTNKQMYQSALARRVADMLLGFTLSPYLGKALGQMKGSSAGRVQTPCLKLIVDRDREI
EKFKALPENEKVSYQIQAKINDNANKEVIIKHCDENGEEIKFNDKEEALKLFESLKDNKA
CLLKDLKNSVAETKPKKPFITSTLLEKASSELGLGISEVQSLAQSLFEAGLITYIRTDAE
SLSVEFLNEAENFYTPIYKEVYLKREYKAGKQSQAEAHEAIRITHPHTYENLESVVYNAG
ITNQDALKLYQLIFERTIESQGKNAIYDKQDLLFKIKNEYFKCSVKSLKSAGFLAMFSKK
ELESDESNDDKDDKEKDQNAQFNLKIDDVLSLNDLVLATIKRNTPSPYKEAGFVKLLENK
GIGRPSTYATYLPALLKREYFSISQDKKHTITPTHKGKRVVEVFENAYQFIIDLTYTKQM
EEVLDEIVENKSSYVDFISNLSSKCPKIEKLERNDDEIKPSSEGQITYMENILRDLQLEL
SEEFKNYKEDNRVAKAFLDRYIKEHEFFKKNNKKASSSNNDETRPATPKQIRFAESLAKK
HHVKLPKDYKSNMKVCGDFINEYSKK
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatagcgtcatcattattgaaagccctaataaagtggctaagattaaagaaatc
acaggagctagtgtttttgctaccataggacattttatgcaactaaaaagctatgatgaa
gataataattttaagccgacttttgaatacgacccccaaaagaaaaagcgtatttttgag
ataatagaggcgtgtaaaaacaaaaaagtttatattgccactgaccctgatagagagggt
tatgctataggctatcatttttatgaaaaaattaaaaggatagcaagttctatttataga
gcagagttttttgaaatcactccaagtgggattaacaagggcttacaaaacgcttcttta
tttgaaaacactaataagcaaatgtatcaaagcgctttagcaaggcgtgtggctgatatg
ctattaggttttacgctctccccttatttaggcaaagctttagggcaaatgaaaggctct
agtgctggaagagtgcaaaccccttgtttaaagcttattgtggatagagacagagaaatt
gaaaaatttaaggctttacctgaaaatgagaaagtaagctatcaaatccaagctaagatt
aacgacaatgctaataaagaagtcattatcaagcattgtgatgaaaatggcgaagaaatt
aaattcaatgataaagaagaggctttaaaactctttgaaagtttgaaagacaataaagct
tgtcttttaaaagatttaaaaaattctgttgcagagactaaacctaaaaagccctttatc
acttctactcttttagagaaagcgagttctgagttaggtttaggtattagcgaagtgcaa
tctttagctcaaagtctttttgaagctgggcttattacttacattagaacggacgctgaa
agtttgagtgtggagtttttaaatgaggcagagaacttttatacacccatttataaagaa
gtgtatctaaaaagagaatataaagctggtaagcaaagtcaagcagaagctcacgaggcg
attaggattacgcacccccatacttatgaaaacttagaaagtgtggtctataatgctggc
attactaatcaagacgctttaaaactctatcaacttatttttgaaaggactattgaaagt
caaggcaagaatgctatttatgacaaacaagacttgctctttaaaatcaaaaatgagtat
tttaagtgtagcgttaagagtttaaaaagcgctgggtttttagcaatgttttctaaaaaa
gaattagagagcgatgaaagtaatgatgacaaagatgataaagaaaaagaccaaaacgca
caatttaatctaaaaattgatgatgtgttaagtctaaatgacttagttttagctaccatt
aaaagaaataccccaagcccttataaagaggcaggctttgtaaagcttttagaaaataaa
ggcataggaagacctagcacttatgctacctatttgcctgcgcttttaaaaagagaatac
ttcagcattagccaagataaaaaacacaccattacacccacgcataaaggcaaaagagta
gtagaagtgtttgaaaatgcttatcaatttattattgatttgacctacactaagcaaatg
gaagaagtgctagatgagattgtagaaaataaaagctcttatgtagattttataagtaat
ttaagttctaaatgccctaagattgaaaagctagaaagaaatgatgatgagataaagcct
agtagtgaggggcaaatcacttatatggaaaatattttaagagatttacaattagaacta
agcgaagagtttaaaaactacaaagaagacaacagggtagctaaagcgtttttggataga
tatattaaagagcatgagttctttaagaaaaacaataaaaaggctagtagctctaataat
gatgaaactagacctgctacacccaaacaaattagatttgctgaaagcttggctaaaaag
catcatgtcaagctccctaaagattacaaaagcaacatgaaagtgtgtggggattttatc
aatgagtatagtaagaagtag
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