Helicobacter pylori Shi112: HPSH112_01535
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Entry
HPSH112_01535 CDS
T02037
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hhp
Helicobacter pylori Shi112
Pathway
hhp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPSH112_01535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhp03019
]
HPSH112_01535
03009 Ribosome biogenesis [BR:
hhp03009
]
HPSH112_01535
Enzymes [BR:
hhp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPSH112_01535
Messenger RNA biogenesis [BR:
hhp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPSH112_01535
Ribosome biogenesis [BR:
hhp03009
]
Prokaryotic type
rRNA helicases
HPSH112_01535
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
AAA_30
AAA_22
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
AFI00528
LinkDB
All DBs
Position
303173..304651
Genome browser
AA seq
492 aa
AA seq
DB search
MEFNQPPLPTEIDDDAYHKPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDV
IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKHTRTKTVC
VYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLD
DIEEIFDYLPSEAQILLFSATMPEPIKRLADRILENPIKIHIAPSNITNTDITQRFYVIN
EHERAEAIMHLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASI
MAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL
VTPLEYKELLRMQKEIDSKIELFEIPTINENQIIKTLHDAKVSEGIISLYEQLTEIFEPS
QLVLKLLSLQFETSKIGLNQQEIDAIQNPKEKTPKTSNKKTHQREQARSFKKGQHQDRHP
KTNHHSKKPKRR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaatcaaccaccactccctacagaaattgatgatgacgcttatcataagccg
agttttaatgatttgggcttaaaagaatcggttttaaaatccgtttatgaagccggtttc
acttccccaagccccattcaagaaaaggctattccggctgttttgcaaggccgagatgtc
atcgcacaagcccaaacaggcacaggaaaaaccgccgctttcgctctgcccattatcaac
aaccttaaaaacaaccacaccatagaggccttagtgatcacgcccactagagagttagcc
atgcaaattagcgatgagattttcaaattgggcaaacacactaggactaaaaccgtgtgc
gtgtatggaggccagagcgttaaaaaacaatgcgaatttattaagaaaaacccccaagtg
atgatcgctacaccaggaaggttgctggatcatttaaaaaacgaacgcatccataaattt
gtgcctaaagtggtcgttttagatgaaagcgatgaaatgctggatatggggtttttagac
gatattgaagagatttttgactatctccctagcgaagcgcagattttgcttttttcagcc
acgatgccagagccgattaaaagactagcggataggattttagaaaaccctattaaaatc
catatcgccccttccaatatcactaacactgacatcacccaacgcttttatgtgattaat
gagcatgagagggctgaagcgatcatgcaccttttagacacccaagcgcccaaaaagagt
attgttttcacgcgcaccaaaaaagaagccgatgaattgcaccaattccttgcttctaaa
aattacaaaagcaccgccttgcatggggatatggatcaaagggatcggcgcgcttctatc
atggcgtttaaaaaaaatgacgctgatgtgttggtggctacagatgtggcgagccgtggg
ttggatattagcggtgtaagccatgtgttcaattaccacttgcccctaaataccgagagc
tatatccatcgcatcgggagaaccgggcgagcgggcaaaaaaggcatggcaatcacttta
gtaacccccttagaatacaaagagcttttacgcatgcaaaaagaaattgattcaaaaatt
gagctttttgagatccccaccattaacgaaaatcagatcatcaaaaccttgcatgacgct
aaagtgtctgaagggatcatcagtctttatgaacagcttactgaaatttttgagccgtct
caattggttttaaaacttttgagcttgcagtttgaaaccagcaaaattggcttaaaccag
caagaaattgatgcgattcaaaaccctaaagaaaaaacgccaaaaacctctaacaaaaaa
acacaccagcgtgagcaagcgcgttctttcaaaaagggtcagcaccaagacagacaccct
aaaacaaaccaccattctaaaaaacccaaacgccgttaa
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