Helicobacter pylori Shi112: HPSH112_03435
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Entry
HPSH112_03435 CDS
T02037
Name
(GenBank) DNA polymerase III subunits gamma and tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
hhp
Helicobacter pylori Shi112
Pathway
hhp03030
DNA replication
hhp03430
Mismatch repair
hhp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hhp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HPSH112_03435
03430 Mismatch repair
HPSH112_03435
03440 Homologous recombination
HPSH112_03435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hhp03032
]
HPSH112_03435
03400 DNA repair and recombination proteins [BR:
hhp03400
]
HPSH112_03435
Enzymes [BR:
hhp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HPSH112_03435
DNA replication proteins [BR:
hhp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HPSH112_03435
DNA repair and recombination proteins [BR:
hhp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HPSH112_03435
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNAX_ATPase_lid
AAA
AAA_22
AAA_14
AAA_5
RuvB_N
DNA_pol3_gamma3
RCF1-5-like_lid
AAA_30
EH_Signature
AAA_19
DEAD
TIP49
AAA_assoc_2
ResIII
Motif
Other DBs
NCBI-ProteinID:
AFI00893
LinkDB
All DBs
Position
679155..680852
Genome browser
AA seq
565 aa
AA seq
DB search
MQVLALKYRPKHFSELVGQESMAKTLSLALDNQRLANAYLFSGLRGSGKTSSSRIFARAL
MCEKGPKAVPCDTCTQCQSALNNHHIDIIEMDGASNRGIDDVRNLIEQTRYKPSFGRYKI
FIIDEVHMFTTEAFNALLKTLEEPPSHVKFLLATTDALKLPATILSRTQHFRFKKIPENS
VISHLKTILEKEQVSYETSALEKLAHSGQGSLRDTITLLEQAINYCDNAITESKVAEMLG
AIDRSVLEDFFQSLINQDEARLQERYAILENYETESVLEEMMLFLKAKLLSPDAYSILLI
ERFFKIIMSGLSLLKEGANASFVLLLLKMKFKEALKLKALDDAILELEQSKESVLKPLNQ
NANAFKQEPKNAEKIEKPEKRENTETPQTPMLSAKDRIFHNLFKQVQTLVYERNYELGAV
FEKNIRFIDFDSQTKTLTWESLATHKDKELLRERFKIVKSIVDGVFGKGETIKIALKNYS
ENKSALEVVKGFKFPYLKPKPTTETTAEMKEKETKEKEIKENDTKEVQETQPKETPTALQ
EFMANHSDLIEEIRSEFEIKSVELL
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgcaagttttagcgttaaaataccgccccaaacattttagcgagctagtcggtcaagag
agcatggctaaaacgctttctttagccctagacaaccagcgtttggctaacgcttattta
ttcagcgggttaagaggttcaggcaaaaccagctcttctaggattttcgctagggcttta
atgtgtgaaaaagggccaaaagccgtgccttgcgatacttgcacccaatgccagagcgct
ttaaacaaccaccatatagatattatagaaatggacggagcgtctaatagggggattgat
gatgtccgtaatctcatagagcaaacgcgctacaaaccaagctttgggcgttataaaatc
tttatcattgatgaagtgcatatgttcaccaccgaagcgtttaacgcgcttttaaagact
ttagaagagcctcctagccatgtgaaattccttttagcgacaacggacgccttgaaattg
cccgctaccatactcagccgcacccagcatttccggtttaaaaaaatccctgaaaattcc
gttatttctcatttaaaaaccattttagaaaaagaacaagtgagctatgaaacaagcgcg
ttagaaaaactggctcacagcgggcaagggagcttgagggatacgatcactcttttagag
caagccatcaattattgcgataacgctatcacagaaagcaaagtggctgaaatgttagga
gcgattgatcgaagcgttttagaagatttttttcaaagcctaatcaaccaagatgaagcg
cgattgcaagagcgttatgccattttagaaaattatgaaaccgagagcgttttagaagaa
atgatgctttttttgaaagcgaaattattaagccctgatgcttattccatccttttgata
gagcgcttttttaaaatcatcatgagcggtttgagccttttaaaagaaggagctaatgcc
agttttgtgctgttgttattgaaaatgaaattcaaagaagctttgaaactcaaagcccta
gacgatgcgattttggaattagagcaaagtaaagaaagcgttttaaaacccttaaaccaa
aacgctaacgcctttaaacaagaacccaaaaacgcagagaaaatagaaaagccagaaaaa
agagaaaacacagaaaccccacaaactcccatgctttcagccaaagatcgcatttttcac
aaccttttcaaacaagttcaaacattggtttatgagcgcaattacgaattaggggcggtg
tttgaaaaaaatatccgtttcattgattttgacagccagactaaaaccttgacttgggag
tctttagctacccataaagataaagagcttttaagagagcgttttaaaatcgtgaaaagc
atcgttgatggggtttttggcaagggcgaaactatcaaaatcgctttaaaaaattattca
gaaaataaaagcgctttagaagtggttaaagggtttaaattcccttatttaaagcccaaa
ccaaccaccgaaacgacggctgaaatgaaagaaaaagaaactaaagaaaaagagattaaa
gaaaacgacactaaagaagttcaagaaacccaaccaaaagaaacccctacagccttgcaa
gaattcatggctaaccattccgatctcattgaagagattaggagcgagtttgaaatcaaa
agcgtggaattgttatga
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