Helicobacter pylori Shi112: HPSH112_04285
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Entry
HPSH112_04285 CDS
T02037
Name
(GenBank) cag pathogenicity island protein CagA
KO
K15842
cytotoxicity-associated immunodominant antigen
Organism
hhp
Helicobacter pylori Shi112
Module
hhp_M00564
Helicobacter pylori pathogenicity signature, cagA pathogenicity island
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CagA_N
CagA
STX6_10_61_N
Motif
Other DBs
NCBI-ProteinID:
AFI01058
LinkDB
All DBs
Position
complement(862696..865695)
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AA seq
999 aa
AA seq
DB search
MANETIDQTKKPDQTPIVDKNDNKAIKNPTKKNQFFSKLTDLFALGKKQSSDLEETLNQE
PRSNVEQNIATTTNMQGLPQARDLLDGRGNFPKFTLGDMEMLDVEGIADIDPNYKFSQLL
VHSNVLSSMSMGSHSNMEPEKVSLLYGDNGGPEARHDWNATVGYKNQQGNNVATLINMHL
KNGSGLVIAGNEGGINNPSFYLYKKDQLTGLEQALSQEEIQNKVDFMEFLAQNSTKLDNL
SEKEKEKFQTEIGNFQKDPKAYLDTLGSDHIAFVSKKDNKHLALVTDFGNGELSYTLKDY
GKEQDRALDRETKTTFQGNLKDDGVMFVNYSNFKYTNASKSPNEGIGATNGVSHLEANFS
KVAIFNLPKLNGLVLSNHPVRQNLEDKVIAKGLSPKEANKLVKDFLNSNKELVGKVSSFN
KAVAEAKNTGNYGGVKKAQKDLEKSIRKREHLEKEVTKKIESKSGNKNKMEAKAQANSQK
DEIFALINQETYKEARNASYDQNLEGIRRELSDKIENINKNLKDFNKSFDALKSGNNKDF
SKVEETLKALKSSVKDLGINPEWISKVENLSTALNEFKNGKNKDFSKVTQAKSDLENSIK
DAIVNQEITDKVDNLNQAVLVAKTACNFSMLDQALADLKNFSTDQKLDQKNESFNVGKDS
DLQKSVKNRVNGTLVGNGLSKTEATTLTGKISGIKKELNEKFANFNNNNGLKNSAEPIYA
QVNKKKTGQVTSPEGSIYDQVAKDVSAKIDKLNKIASASKGVDDFSGLGLGRLATRLDGR
EPIYVTIDDLGGPYTLKMHAGDDNLRSKVGLSRDQELTQKIGNLNQAVLEAKAGLFVNPQ
QMTHLEQMMHGLKDSTKKNVVNLWFEGAKKVPTSLQAKLDNYATNSHIHINSNVKNGAIN
EKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSDYDKIGFNQKNMKGYSDSFKFSTKFNN
AVKNIKSGFEQFLTDCFSTGSYSPKKAEYGVTKSGFQKS
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atggctaacgaaaccatcgatcaaacaaaaaaaccagatcaaacaccaatcgttgataag
aacgataataaagcgatcaaaaatcccaccaaaaagaatcagtttttttcaaaacttacc
gatttgtttgcacttggcaaaaaacaatcttccgatctcgaagaaacgctcaatcaagag
ccaaggtctaatgttgaacaaaatatagccactaccaccaacatgcaaggtttacctcaa
gctagggatttgcttgatggaaggggtaattttcctaaattcactcttggtgatatggaa
atgttggatgttgagggtatcgccgacattgatcctaattacaagttcagccagttattg
gttcacagtaatgttctgtcttctatgtcaatggggagtcatagcaacatggaacctgaa
aaagtttcattgttgtatggggataatggtggtcctgaagctaggcatgattggaacgcc
accgttggttataaaaaccaacaaggcaacaatgtggccacactcatcaatatgcatctt
aaaaacggcagtgggttagtcatagcgggtaatgaaggtgggattaacaaccctagcttc
tatctctacaaaaaagaccaactcacaggcttggaacaagcgttgagtcaagaagagatc
caaaacaaagtggatttcatggaatttcttgcacaaaacagcactaaattagataacttg
agcgagaaagagaaagaaaagttccaaactgaaattggaaatttccaaaaagaccctaag
gcttatttagacaccctagggagtgatcacattgcttttgtttctaaaaaagacaacaag
catttagctttggttaccgattttggtaatggggaattgagctataccctcaaagattat
gggaaagaacaagatagagctttagatagggagacaaaaaccacttttcaaggtaaccta
aaagatgatggcgtgatgtttgtcaattattccaatttcaaatacaccaacgcctccaag
agtcctaatgagggtataggcgctacgaatggcgtttcccatttggaagcaaattttagc
aaggtagctatctttaatttgcctaaattaaatggtctcgttctctctaatcatcctgta
aggcaaaatttagaggataaggtgatcgctaaaggattgtccccaaaagaagctaataag
ctcgtcaaagactttttgaacagtaacaaggaattggttggaaaagtttcaagtttcaat
aaagctgtagctgaagctaaaaatacaggcaattatggcggagtgaaaaaagctcaaaaa
gatcttgaaaaatctataaggaaacgagagcatttagagaaagaagtaacgaaaaaaatt
gagagcaagagcggcaacaaaaataaaatggaagcaaaagctcaagctaacagccaaaaa
gatgagatttttgcgcttatcaatcaagagacttataaggaagcaagaaatgccagttac
gatcagaatcttgaaggcatcaggagggaattgtctgataaaattgaaaatatcaacaag
aatttgaaagactttaataaatcttttgatgcgctcaaaagtggcaacaataaggatttc
agcaaggtagaagaaacgctaaaagcccttaaaagctcggtgaaagatttgggtatcaat
ccagaatggatttcaaaagttgaaaaccttagtacagctttgaatgaatttaaaaatggc
aaaaataaggatttcagcaaggtaacacaagcaaaaagcgaccttgaaaattccattaag
gatgcgatcgtcaatcaagagataacggataaagttgacaatctcaatcaggctgtatta
gtggctaaaacggcatgcaatttcagtatgttagatcaagcgctagccgacctcaaaaac
ttctcaacggatcaaaaattggatcaaaaaaatgaaagtttcaatgttggaaaagattct
gatctacaaaaatccgttaaaaatcgtgtgaatggaaccctagtcggtaatgggttatct
aaaacagaagccacaacgctcaccggaaaaatttcgggtattaagaaagaattgaatgag
aaatttgcaaatttcaacaataataatggactcaaaaacagtgcagagcccatttacgct
caagttaataaaaagaaaacaggacaagtaactagccctgaagggtccatttacgatcaa
gttgctaaagatgtaagtgcaaaaattgacaaactcaataaaattgcatcagcaagtaaa
ggagtggacgatttcagtggattaggattagggcgattagcaacgcgattagatggccgt
gaacccatttatgttacgattgatgatctcggcggaccttatactttgaaaatgcatgct
ggagatgataatctcaggagtaaggtagggctttcaagggatcaagaattgactcagaaa
attggcaatctcaatcaggcagtgttagaagctaaagcaggtctttttgtaaacccacaa
caaatgacacatctagaacaaatgatgcatggactcaaagattctacaaaaaagaatgtt
gtgaatctatggtttgaaggtgcaaaaaaagtgcctactagtttgcaagcgaaattggac
aattacgctactaacagccacatacacattaatagcaatgtcaaaaatggagcaatcaat
gaaaaagcgaccggcatgctaacgcaaaaaaaccctgagtggctcaagctcgtgaatgat
aagatagttgcgcataatgtgggaagcgttcctttgtcagattatgataaaattggattc
aaccaaaagaatatgaaaggttattctgattcgttcaagttttccaccaagttcaacaat
gccgtaaaaaacattaagtctggctttgagcaatttttaaccgattgcttttctacagga
tcttatagcccgaagaaagcggaatatggagttacaaaaagtggtttccagaaatcttaa
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