Helicobacter pylori Shi112: HPSH112_04540
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Entry
HPSH112_04540 CDS
T02037
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
hhp
Helicobacter pylori Shi112
Brite
KEGG Orthology (KO) [BR:
hhp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hhp03032
]
HPSH112_04540 (gyrB)
03400 DNA repair and recombination proteins [BR:
hhp03400
]
HPSH112_04540 (gyrB)
Enzymes [BR:
hhp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
HPSH112_04540 (gyrB)
DNA replication proteins [BR:
hhp03032
]
Prokaryotic type
DNA Topoisomerases
HPSH112_04540 (gyrB)
DNA repair and recombination proteins [BR:
hhp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HPSH112_04540 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
AFI01107
LinkDB
All DBs
Position
complement(916546..918867)
Genome browser
AA seq
773 aa
AA seq
DB search
MQNYQSHSIKVLKGLEGVRKRPGMYIGDTNVGGLHHMVYEVVDNAVDESMAGFCDTINIT
LTDEGSCIVEDNGRGIPVDIHPTEKIPACTVVLTILHAGGKFDNDTYKVSGGLHGVGVSV
VNALSKRLIMTIKKEGQIYRQEFEKGIPISELEIIGKTKSAKESGTTIEFFPDESVMEVV
EFQAGILQKRFKEMAYLNDGLKISFKEEKTQLQETYFYEDGLKQFVKDSAKKELLTPVIS
FKSMDEETRTSIEVALAYADDYNENTLSFVNNIKTSEGGTHEAGFKMGLSKAILQYIDGN
IKTRESRPISEDIKEGLIAVVSLKMSEPLFEGQTKSKLGSSYARALVSKLVYDKIHQFLE
ENPNEAKIIANKALLAAKAREASKKARELTRKKDNLSVGTLPGKLADCQSKDPLESEIFL
VEGDSAGGSAKQGRDRVFQAILPLKGKILNVEKSHLSKILKSEEIKNMITAFGCGIQESF
DIERLRYHKIIIMTDADVDGSHIQTLLMTFFYRYLRPLIEQGHVYIAQAPLYKYKKGKTE
IYLKDSVALDHFLIEHGINSVDIEGIGKNDLMNLLKVARHYRYALLELEKRYNLLEILRF
LIETKDALSFDMKILEKSILEKLEGLNYQILRSFATEESLHLHVQTPKGLVEFNLDDNLF
KEVLFEEANYTYQKLMEYNLDFLENKDILAFLEEVENHAKKGANIQRYKGLGEMNPNDLW
ETTMHKENRSLIKLKIEDLEKTDAVFSLCMGDEVEPRRAFIQAHAKDVKQLDV
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaattaccagagccatagtatcaaggttttaaaaggcttagagggggttaggaaa
cgccctggaatgtatattggcgataccaatgtgggtgggttgcaccacatggtgtatgaa
gtcgtggataacgctgtagatgagagcatggcgggtttttgcgatacgattaatatcact
ttgactgatgagggttcatgcatcgtggaagataacgggcgaggcattcctgtagatatt
caccccacggaaaaaatccccgcttgcaccgtggttttaacgattttgcatgcggggggc
aagtttgataatgatacttataaagtttcaggcggtttgcatggcgtgggcgtttcggtt
gtgaacgctttgagcaaacgcttgattatgaccattaaaaaagagggtcaaatctatcgc
caggagtttgaaaagggtatccccattagcgagcttgaaatcattggcaaaaccaaaagc
gctaaagaaagcggcacgactattgaatttttccctgatgagagcgtgatggaagtcgtt
gaatttcaagcgggcattttgcaaaaacgcttcaaagaaatggcgtatcttaacgacggc
ttaaaaatttctttcaaagaagaaaaaacccagctgcaagagacttatttctatgaagac
ggcttgaaacaattcgttaaagacagcgctaaaaaagaattgctcacccccgttatttcg
tttaaaagcatggatgaagaaacgcgcacttctatagaagtcgctctagcgtatgctgat
gattacaacgaaaacactttaagctttgtgaataacattaaaacttctgagggcggcacg
catgaagcgggctttaaaatgggtctgtctaaggcgattttacaatatattgatggaaac
attaagacaagagaatcccgccccatctctgaagacattaaagagggcttgattgcggtt
gtgagcttgaaaatgagcgagcctttatttgaagggcagactaaatccaaactcggtagt
tcgtatgcacgcgcgttggtttcaaaattagtctatgataaaatccatcaatttttagaa
gaaaaccctaacgaagccaaaatcattgccaataaagcccttttagccgcaaaagccaga
gaagccagtaagaaagccagagagcttacaaggaaaaaagataatttgagtgtcggcact
ttgcctggaaaattagccgattgccagagtaaagaccccttagagagtgaaatcttttta
gtggagggcgatagtgcaggcgggagcgctaaacaagggcgcgatagggttttccaagcg
atcttgcccttaaaaggtaagattttaaatgtggaaaaaagccatttgtcaaaaatccta
aaatcagaagaaattaaaaacatgatcacggcttttgggtgtggcattcaagagagtttt
gatatagaaagattgcgctatcataaaatcattatcatgaccgatgctgatgtggatggg
agccatatccaaaccttgctgatgacttttttctatcgttatttgcgcccgctgattgaa
caagggcatgtttatatcgctcaagcccctctttacaaatacaagaaaggcaagacagaa
atctatcttaaagacagcgtcgccttggatcatttcttaattgagcatggcatcaattcg
gtggatattgaagggattggcaagaacgatttgatgaatttgttaaaagtggcgcgccat
taccgctacgcgcttttggaattagaaaaacgctacaatttgctagaaattttacgcttt
ttgattgaaaccaaggacgccttaagctttgatatgaaaattttagaaaaaagcattttg
gaaaaattagagggcttgaattatcagatcttacgctcttttgctactgaagaaagcttg
catttgcacgtgcaaacccctaaaggcttggtggaatttaacctagatgacaatctcttt
aaagaagtgttgtttgaagaagcgaattacacttaccaaaaacttatggaatataattta
gacttcttagaaaataaggatattttggcgtttttagaagaagtggaaaatcacgctaaa
aagggagcgaatatccagcgctataaggggctaggcgagatgaaccccaatgatttgtgg
gaaacgaccatgcataaagaaaaccgcagcttaatcaaactcaaaattgaagatttagaa
aaaaccgatgcagtcttttcgctttgcatgggcgatgaggtagagcctagaagagccttt
atccaagcgcatgctaaagatgtgaaacagctagatgtgtaa
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