Helicobacter pylori Shi112: HPSH112_06050
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Entry
HPSH112_06050 CDS
T02037
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hhp
Helicobacter pylori Shi112
Pathway
hhp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPSH112_06050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhp03019
]
HPSH112_06050
03016 Transfer RNA biogenesis [BR:
hhp03016
]
HPSH112_06050
Enzymes [BR:
hhp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HPSH112_06050
Messenger RNA biogenesis [BR:
hhp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HPSH112_06050
Transfer RNA biogenesis [BR:
hhp03016
]
Prokaryotic type
tRNA degradation factors
HPSH112_06050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
S1_2
Motif
Other DBs
NCBI-ProteinID:
AFI01399
LinkDB
All DBs
Position
complement(1249030..1251096)
Genome browser
AA seq
688 aa
AA seq
DB search
MDFITITSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCVEREPVGEDFLPLVVQFL
EKSYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDVEN
DLQVSALNAASAALFLSHIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKE
SLNMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEIFTPHQNELLFKESQGII
FNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEFSLEEIELSLEKVK
KTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDND
AQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKE
QVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDIS
GLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIHLEVLYQALLQAKKAREHILKIMHEAKE
KIVINFSHLPTTEIFNVEPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMGNKE
RVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQNMDR
CQVVLKEGDSIKCRVISFNKGKIALDLA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggattttatcaccatcacttctagtaacaaaaccgaagagttcgctctcaaacaagtg
gccaaacaagccaccagctctcttatgtatcgcttaggaaaaaccatcattttagcgagc
gtgtgcgtagaaagagagcctgtgggtgaagattttctgcctttagtggtgcagttttta
gaaaaatcttatgcagccggaaagatcccgggcggctttgttaaaagagaaggcagggcg
caagattttgaaatcttaacctctaggcttatagacaggactttacgccctttattccct
aaagattaccgctaccccacacagatcactttaatggttttaagccatgatgttgaaaat
gacttgcaagtttctgctttaaacgctgcttcagccgctctctttttatcccatatcgct
cccattaaaagcgtgagcgcttgcaggatcgctaggattggtaacgaatttatcattaac
cctaacacaagccttttgaatcaatccagtttggatttgttcgtgtccggcacaaaagag
agtttgaacatgatagaaatgcgctctttggggcaacaattaaacgctttagaagagcct
ttaatgctaaaagctttagaattggctcaaaaaagtttgaaagaaacttgcacgctttat
gaagagattttcacgccccaccaaaacgagctgcttttcaaagagagccaaggaataatt
tttaatgaaaggctgttagatttattaaaaaatcagtattttgatgaaatcatcaaaggc
attgaaagttctgctttgagcgagcgagaaaatgttttcaatgaaattgccagaaaaatc
agtgaagcccactcagaattcagtttagaagaaattgaattgtctttagaaaaagtgaaa
aaaactgagataaggcgcatgattattaaggataaaatccgcccggataagcgcgcgtta
gaagaagtgcggcccattttgatagagagcgatttgctccctatggcgcatagctccatt
ttattcactagggggcaaacgcaaagcttagtggtaggggttttaggcacggataatgac
gctcaaacccatgagagtttggagcataaagcccctattaaagagcgcttcatgtttcat
tataatttccctcctttttgcgtgggcgaagcgagttctattggcgcgacttcaaggcgc
gaattagggcatgggaatttggctaaaagggccttagaaacgagcattaaaaataaagag
caggtgatacgattggtttctgagattttagaaagcaatggttcaagctcaatggcgagc
gtgtgcgcaggctctttagccctttatgcaagcggtgtggaaatttatgatttagtcgct
ggggtggctatgggcatggtgagcgaagggcaagatcacgccattttaagcgatattagc
ggattagaagacgcagaaggcgatatggattttaagattgccgggaatttagaaggcatt
acggccatgcaaatggataccaaaatgagcggtatccatttagaggttttataccaagcc
ttactccaagctaaaaaagcgcgagagcatattttaaaaatcatgcatgaagcgaaagaa
aagattgtgatcaatttttcccatttgcccacaacggagatttttaatgtcgagcccgat
aaaattgtagaaattatcggtcaaggggggcgtgtgatcagagagatagtagaaaagttt
gaggttaaaattgatttgaacaaaccgagcggtgaagtgaaaatcatggggaataaagaa
cgggttttgaaaacgaaggaatttattttaaactacttgcattctttggatcaagaattg
gagcaatacgctattgatgaggtattagaagctcaagtgaagcgaatcgtggattttggg
gcgtttttaagcttgcctaagggaggcgaaggcttgttaagaaagcaaaacatggacagg
tgtcaagtggttttaaaagaaggcgatagcatcaaatgtagggtgattagtttcaataag
ggtaaaatcgctttggatttggcttaa
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