Helicobacter pylori Shi112: HPSH112_06200
Help
Entry
HPSH112_06200 CDS
T02037
Name
(GenBank) outer membrane protein BabA
KO
K15847
outer membrane protein BabA
Organism
hhp
Helicobacter pylori Shi112
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SabA_adhesion
HP_OMP
Motif
Other DBs
NCBI-ProteinID:
AFI01429
LinkDB
All DBs
Position
complement(1278288..1281605)
Genome browser
AA seq
1105 aa
AA seq
DB search
MLHAEDDGFFISTGYQIGEALQKVKNTGEIQKLSDKYENLSNFFNFAANNTNALAGNFAA
NNTLTTESINTAVSSLNKSAKELATSTSSPAYQAVALALSSAVGLWQTIGYTIPCGPGKD
ANGSDQTFDNTPTPNKNTTTCNQTPTGSSGSTGAGNPLSSAEYAKINEAYQIIQAAFKAG
IPALDSKGTTIEVTITGDTITGGTTTPTKTTLTATNDAQSLLTQASTIINTLTTQCPKEN
LGSGETWGVDKSGNVCQIFSNSFSAITNMINTAQQIVTQTQQLNTNQQTLDNFNPDASSN
FTFAQNMLKDIQSQEAVIKLVNEVMSDFKTINPTMQSDLQGCNSPNGVINSNTWGSGCAN
LQETLNSLETYNASYSNQINQAQAVANSLYDNSFNSKNPNVINWAINHLDGGANNLIGDT
KTSPAYQAVLLAINAAVGFWNVLGYATQCGGNGSQKSTSSTTIFNNEPGYRSTSITCGYN
NLVIGNQGVMSIDNMKKLNEAYQILQTALKKGLSALNQNDGKVDVTYTYTCSGEGNNNCF
IKLADGKYLAQNGGSETTTQTIDGKQVSTTISSKVVDSKESGNASGVSYTEITNALNGVP
DNAQALLAQASTLINTINSACPWFRVTNQSGGPQMNPTSGGLCVFKDEISAIQKMIADAQ
EIVAQSKTIADTPLKEVTPNDFNPYSSANTQLAQNMLANAKMQEEILSLANQVGQTINPS
NLSGNFQYFVEKYLATCENPYGNGIYGTPPGTVTKNTFASGCAYAAPTLNALKEYNSLYG
NQISQAQIVANNLLKDIHDGMPHSGNSGNSGNGTTNKNHTASNTPNSPLPPQGSTNHPGN
THSPTNSGNSGNGTTDKNHTASNTPNSPLSPQGTTNHPGNTHSPTNSGNGGNGTTDKNHT
ASNTPNSPFQELGHNPFRRIGLISSQTNNGAMNGVGVQVGYKQFFGEKRRWGLRYYGFFD
YNHAFIRSNFFNSTSNVFTYGVGSDALFNFINDKVAKNSRLSVGLFGGIAIAGTSWLNSQ
YVNLKTVSNVYNAKINTANFQFLFNLGLRMNLSRNKKKVSDHAAQHGMELGVKIPTINTN
YYSFMGAKLEYRRLYSVYLNYVFAY
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
ttgctccacgctgaagatgatggcttttttataagcacaggttatcaaatcggtgaggct
ctccaaaaggttaaaaacacaggagaaatacaaaaactttcggataagtatgaaaacttg
agtaactttttcaacttcgcagccaataacacaaacgctctcgcaggtaacttcgcagcc
aataacacgctaactactgaaagtatcaacacggcggtttctagtttaaataaaagcgcc
aaagaactagccactagcacttcttctccagcgtatcaggccgtggctctagcactcagt
tctgcggtggggctatggcaaaccataggctatacgattccatgtggtcctggtaaagac
gccaatggaagcgatcagacatttgataacacgcccacgccaaacaaaaacaccaccact
tgcaaccaaactccaacaggatcaagtggttcaacaggagcaggtaatcctctatccagc
gctgaatacgccaagatcaacgaggcttaccaaatcatccaagcggcttttaaagcaggg
atacctgctttagacagcaaagggacaacgatagaagtaaccataacaggagacaccatc
acaggaggaacgacaacccccacaaaaaccacgctaacagcgactaatgatgcacaaagc
cttttaactcaagcaagcaccattatcaatacccttaccactcaatgcccaaaagagaat
cttggcagtggtgagacatggggagtggataagagcgggaatgtgtgtcaaatttttagc
aattcttttagcgctatcacaaacatgataaacaccgcccaacaaatcgtaacacaaacc
caacagctcaacactaaccaacaaaccctagacaatttcaaccctgatgcttctagcaat
ttcacttttgctcaaaacatgctcaaagacatccaatctcaagaagcggttattaaatta
gtcaatgaagtgatgagcgatttcaaaaccatcaatccaacgatgcagagtgatttgcag
ggatgtaactcacccaatggcgtgatcaattccaacacttgggggtcaggctgcgcgaat
ctacaagagactttgaactctttggaaacatacaacgcttcttatagcaaccaaatcaat
caggcgcaagcggttgctaacagcctttatgataactctttcaattctaaaaaccctaat
gttatcaattgggcgatcaatcatttagatggaggcgcgaataatttgatcggcgatacc
aaaacttctccggcctatcaagccgtgcttttagcgatcaatgcggcggtggggttttgg
aatgtcttaggctatgctacgcaatgcgggggtaatggtagtcaaaaaagcacctcttca
accaccatcttcaacaacgagccagggtatcgatccacttccatcacttgcggttataac
aatctagtaattggaaaccaaggcgttatgagcattgataacatgaaaaagcttaacgaa
gcctatcaaatcctccaaacggctttaaagaaaggcttgagcgcactcaatcaaaacgac
gggaaggttgatgtaacctatacttacacatgctcaggggaagggaataataactgcttt
ataaaattagcggatggtaaatacctcgcacaaaatggcggaagtgaaaccaccacccaa
accatagacggcaaacaagtgagcaccacgatcagttcaaaagtcgttgattctaaagaa
tcaggtaatgcatcaggggtgtcctacaccgaaatcaccaacgcattgaacggagtgcct
gataacgctcaagcgctcttagcgcaagcgagcacactcatcaacaccatcaacagcgca
tgcccatggtttagagtgactaatcaaagtggtggcccacagatgaacccgacttcaggg
ggtttgtgcgtttttaaagatgaaatcagtgcgatccaaaagatgatcgcagacgcgcaa
gaaatcgttgcgcaaagcaaaaccattgctgataccccactaaaagaggtaacgccaaat
gatttcaacccctattcttctgcaaacactcaattggctcaaaacatgctcgctaacgct
aaaatgcaagaggaaatactgagtctagccaatcaagtggggcaaaccattaaccctagc
aatcttagcgggaacttccagtattttgttgaaaagtatttagccacatgcgagaacccc
tatggtaatggcatatacggcacacccccaggcacggttactaaaaacactttcgcttcc
ggttgcgcgtatgcagcgcccactttaaacgccttaaaagaatataactccctttatggc
aatcaaatcagtcaggcgcaaattgttgctaacaaccttttgaaagacatccatgatggc
atgccccattcgggtaactcagggaatagtgggaatggcacaacaaataaaaaccatacc
gcttcaaacacgcccaattccccactaccgcctcaaggatcaacaaatcatccaggaaat
acccatagccccacaaactcagggaatagtgggaatggcacaacggataaaaaccatacc
gcttcaaacacgcccaattccccactatcacctcaagggacaacaaatcatccaggaaat
acccatagccccacaaactcagggaatggtgggaatggcacaacggataaaaaccatacc
gcttcaaacacgcccaattccccgtttcaagaactcggccataaccctttcagacgcatt
ggattaatcagctctcaaaccaataacggcgcgatgaatggcgttggcgtgcaagtgggc
tacaagcaattctttggagagaagagaaggtgggggttaaggtattatggcttttttgat
tacaaccatgcgtttatccgatccaacttcttcaactccacttccaatgtcttcacctac
ggcgtggggagcgatgcgttattcaacttcatcaatgacaaggtcgctaaaaacagcaga
ctctcagtagggctctttgggggtatcgccatagccggcacttcatggcttaattcccaa
tatgtgaatctaaaaaccgtaagcaatgtctataacgctaagatcaacaccgctaatttc
caattcttattcaatttaggtttgaggatgaatctttccagaaacaaaaagaaagttagc
gatcatgccgctcagcatggcatggaactaggcgtgaaaatccccaccattaacacgaat
tactattctttcatgggggcgaaattagaatacaggagactctatagcgtgtatttgaat
tatgtgttcgcgtattaa
DBGET
integrated database retrieval system
