Helicobacter pylori Shi112: HPSH112_07485
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Entry
HPSH112_07485 CDS
T02037
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hhp
Helicobacter pylori Shi112
Pathway
hhp03420
Nucleotide excision repair
hhp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hhp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPSH112_07485
03430 Mismatch repair
HPSH112_07485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhp03400
]
HPSH112_07485
Enzymes [BR:
hhp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPSH112_07485
DNA repair and recombination proteins [BR:
hhp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPSH112_07485
MMR (mismatch excision repair)
Other MMR factors
HPSH112_07485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
PcrA_UvrD_tudor
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AFI01678
LinkDB
All DBs
Position
complement(1522170..1524215)
Genome browser
AA seq
681 aa
AA seq
DB search
MDFEKSILDNLNEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLT
LTFTNKASKEMQERALKLLENQTLIPPLLCTFHRFGLLFLRQHMGLLKRACDFSVLDSDE
VKTLCKQLKISSFRASISQIKNGMIDLSMQDSECHKAYELYQNALKKDNLVDFDDLLFLS
LKILQDNETIAKETSERYHYIMVDEYQDTNALQLEFLKKLSFTHHNLCVVGDDDQSIYGF
RGADISNILNFSKHFKGAKVVKLETNYRSSAEILACANSLISHNQHRHKKTLQSFKGSHK
SVVCKEYLTQKEESLDVAYQIKALLKKGENLENIAILYRLNGLSRSIEESLNALNIPYRL
IGAVSFYERAEVKDALAFMHLVAKKDDRFFIRRVLNKPSRGLGKITQEWIFSLLDDEGLN
LEEALKLGVFKGKLNPKNEHALNKFIAMIGRLREAFEISVEEFCARFLEETNLLKSYEKE
DNYEEREGFVKELLALVKEHFKTNPTHSLLDFLNESVLDTHNTENAQKVSCMSVHMSKGL
EFKHVFVIGLEEGFFPHRGFNQESDLEEERRLAYVAITRAKEGLQLSYVQERSYFGRKIS
CSPSVFLEEAKLLKQDNPPKQDHKKDAPIKVGDLIRHKIFGTGRVLGVEKGLSGLCLKIN
CGGNVYDKISVKFVEKVDNGF
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggattttgaaaaaagtattttagacaatttaaacgaagcgcaaaaaatcgccgcaagc
cacattcaagggcctttgctgattttagcgggagctgggagcggtaagactaagacttta
acgagccgtttagcgtatttgattggcgcttgtggcgtgcctagcgagaacactttaacg
ctcactttcaccaataaagcgagtaaagaaatgcaagaaagggctttgaaattgttggaa
aaccaaacccttatcccccccttgctttgcactttccatcgttttggtttgctgttttta
aggcaacacatgggccttttaaaaagagcgtgcgatttttcggtgttagatagcgatgaa
gtaaaaacgctgtgcaaacagcttaaaatttcaagctttagagccagtatttctcagatc
aaaaacggcatgattgatttaagcatgcaagatagcgaatgtcataaagcgtatgagctt
taccaaaacgcgcttaaaaaagacaatttagtggattttgacgacttgctttttttaagc
cttaagattttgcaagataatgaaaccatcgccaaagaaactagcgagcgctaccattac
attatggtagatgagtatcaagacacgaacgccttgcaattagaatttttaaaaaaattg
agtttcacgcaccataatttgtgcgtggtgggcgatgacgatcagagcatttatggtttt
aggggggctgatatttctaatattttaaatttttccaagcattttaaaggggctaaggtg
gtgaaattggaaaccaactaccgctccagcgctgaaattttagcgtgcgctaactccctt
attagccataaccaacaccgccacaaaaaaacgcttcaaagtttcaaaggatcgcataaa
agcgtggtttgtaaggaatatttgacgcaaaaagaagagagcttagatgtggcttatcaa
atcaaagcccttttaaagaagggtgaaaatttagaaaatatcgctatactgtatcgctta
aacgggcttagccgcagcattgaagagagcttgaacgctttgaatatcccctataggctt
attggagcggtaagtttctatgaaagagcagaggttaaagacgctttggcgttcatgcat
ttagtggctaaaaaagacgatcgcttttttatcaggcgcgttttaaacaagccctcaaga
ggccttggcaagatcacccaagaatggattttttctcttttagatgatgagggtttgaat
ttagaagaagcgctaaaacttggggtgtttaaaggcaaattaaaccctaaaaacgaacac
gctttgaataaatttatcgctatgatagggcgtttgagggaggcttttgaaatttcagta
gaggagttttgcgctcggtttttagaagaaaccaaccttttaaaaagctatgaaaaagaa
gacaattacgaagaaagagagggctttgttaaagagcttttagccttagtgaaagagcat
tttaaaactaaccccacgcattctttattggattttttgaatgaaagcgttctagatacc
cataatacagaaaacgcgcaaaaagtgagttgcatgagcgtgcatatgagtaaggggtta
gagtttaagcatgtgtttgtgatcgggttagaagaagggtttttcccgcatagggggttc
aatcaagaaagcgatttagaagaagaaaggcgcttggcttacgtagcgatcactagggct
aaagaaggattgcagctctcttatgttcaagagcgttcgtattttgggaggaaaatttct
tgttcgccctctgtgtttttagaagaagccaagttgctcaagcaagacaacccccctaaa
caggatcacaaaaaagacgcgcccattaaagtgggggatttgatcaggcataagattttt
ggcaccggtagggttttaggcgtagaaaaaggcttgagcggtttgtgcttgaaaatcaat
tgcggagggaatgtctatgataaaatctcagtaaaatttgtagaaaaagtggataacggg
ttttga
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