Helicobacter pylori Shi169: HPSH169_06035
Help
Entry
HPSH169_06035 CDS
T02038
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hhq
Helicobacter pylori Shi169
Pathway
hhq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPSH169_06035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhq03019
]
HPSH169_06035
03016 Transfer RNA biogenesis [BR:
hhq03016
]
HPSH169_06035
Enzymes [BR:
hhq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HPSH169_06035
Messenger RNA biogenesis [BR:
hhq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HPSH169_06035
Transfer RNA biogenesis [BR:
hhq03016
]
Prokaryotic type
tRNA degradation factors
HPSH169_06035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
S1_2
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AFH99869
UniProt:
A0A0E0WCM1
LinkDB
All DBs
Position
complement(1248057..1250123)
Genome browser
AA seq
688 aa
AA seq
DB search
MDFITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCAEREPVSEDFLPLVVQFL
EKSYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDVEN
DLQVSALNAASAALFLSHIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKE
SLNMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEIFTPHQNELLFKESQGII
FNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEFSLKEIELSLEKVK
KTEIRRMIIKDKIRPDKRALEEVRSILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDND
AQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKD
QVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDIS
GLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKKAREHILKIMHEAKE
KIVINFSHLPTTEIFNVAPDKIVEIIGQGGRVIREIVEKFEVKIDLNKPSGEVKIMGNKE
RVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQNMDR
CQVTLKEGDSIRCRVISFNKGKIALDLA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggattttatcaccatcaattctagtaacaaaaccgaagagttcgctctcaaacaagtg
gccaaacaagccaccagctctctaatgtatcgcttaggaaaaaccatcattttagcgagc
gtgtgcgcagaaagagagcctgtgagtgaagattttctgcctttagtggtgcagttttta
gaaaaatcttatgcagccggaaagatcccgggcggctttgttaaaagagaaggcagagcg
caagattttgaaatcttaacctctaggcttatagacaggactttacgccctttattccct
aaagattaccgctaccccacacagatcactttaatggttttaagccatgatgttgaaaat
gacttgcaagtttctgctttaaacgctgcttcagccgctctctttttatcccatatcgct
cccattaaaagcgtgagcgcttgcaggatcgctaggattggtaacgaatttatcattaac
cctaacacaagccttttgaatcaatccagtttggatttgttcgtgtccggcacaaaagag
agtttgaacatgatagaaatgcgctctttggggcaacaattaaacgctttagaagagcct
ttaatgctaaaagctttagaattggctcaaaaaagtttgaaagaaacttgcacgctttat
gaagagattttcacgccccaccaaaacgagctgcttttcaaagagagccaaggaataatt
tttaatgaaaggctgttagatttattaaaaaatcagtattttgatgaaatcatcaaaggc
attgaaagttctgctttgagcgagcgagaaaatgttttcaatgaaattgccagaaaaatc
agtgaagcccactcagaattcagtttaaaagaaattgaattgtctttagaaaaagtgaaa
aaaactgagataaggcgcatgattattaaggataaaatccgcccggataagcgcgcgtta
gaagaagtgcggtccattttgatagagagcgatttgctccctatggcgcatagctccatt
ttattcactagggggcaaacgcaaagcttagtggtaggggttttaggcacggataatgac
gctcaaacccatgagagtttggagcataaagcccctatcaaagagcgcttcatgtttcat
tataatttccctcctttttgcgtgggcgaagcgagctctattggcgcgacttcaaggcgc
gaattagggcatgggaatttggctaaaagggccttagaaacgagcattaaaaataaagat
caggtgatacgattggtttctgagattttagaaagcaatggttcaagctcaatggcgagc
gtgtgcgcaggctctttagccctttatgcaagcggtgtggaaatttatgatctagttgct
ggggtggctatgggcatggtgagcgaagggcaagatcatgccattttaagcgatattagc
ggtttagaagacgcagaaggcgatatggattttaagattgccgggaatttagaaggcatt
acggccatgcaaatggataccaaaatgagcggtatccaattagaggttttataccaagcc
ttactccaagctaaaaaagcgcgagagcatattttaaaaatcatgcatgaagcgaaagaa
aagatcgtgatcaatttttcccatttgcccacaacggagatttttaatgtcgcgcccgat
aaaattgtagaaattatcggtcaaggggggcgtgtgatcagagagatagtagaaaaattt
gaggttaaaattgatttgaacaaaccgagcggtgaagtgaaaatcatggggaataaagaa
cgggttttgaaaacgaaggaatttattttaaactatttgcattctttggatcaagaattg
gagcaatacgctattgatgaggtattagaagctcaagtgaagagaatcgtggattttggg
gcgtttttaagcttgcctaagggaggcgaaggcttgttaagaaagcaaaacatggacagg
tgtcaagtgactttaaaagaaggcgatagcatcaggtgtagggtgattagtttcaataag
ggtaaaatcgctttggatttggcttaa
DBGET
integrated database retrieval system
