Helicobacter pylori Shi417: HPSH417_00420
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Entry
HPSH417_00420 CDS
T02039
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hhr
Helicobacter pylori Shi417
Pathway
hhr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hhr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HPSH417_00420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhr03021
]
HPSH417_00420
Transcription machinery [BR:
hhr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HPSH417_00420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
MCR_beta_N
WYL_3
Sigma70_r4_2
DUF1687
HTH_25
SieB
Motif
Other DBs
NCBI-ProteinID:
AFH97248
LinkDB
All DBs
Position
complement(84417..86417)
Genome browser
AA seq
666 aa
AA seq
DB search
MKKKANEEKAPKKTKTEATQENKIKESKIKEAKTKEGKVKETKAKEPVPVKKLSFNEALE
ELFANSLSDCVSYESIIQISAKVPTLAQVKKIKELCQKYQKKLVSSSEYAKKLNAIDKIK
KTEEKQKVLDEELEDGYDFLKEKDFLEWSRSDSPVRMYLREMGDIKLLSKDEEIELSKQI
RLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDDDDENSVSDSKKDDDSE
EDEENEERKKVVSEKDRKRVEKVQESFKALDKAKKEWLKALEAPVDEKEDELVRLLTLAY
KRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKRLEYKLPLFNDTLIANHKK
ILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLDPNKLKEILEQIKRG
KLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMKAVDKFEHEKGFKFS
TYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQENGKEPDLEVVAEEVG
LSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDHIMREDLKAQIESVL
DQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESSAIKKLRSPQYGRIL
RNYLRI
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaaagctaacgaagaaaaagccccaaaaaaaaccaaaacagaagccacacaa
gaaaataaaatcaaagagagcaaaattaaagaagctaaaaccaaagaaggcaaagtcaaa
gaaactaaagcgaaagaacctgttcctgttaaaaagcttagtttcaatgaagcgttagaa
gaattgttcgctaattccttaagcgattgcgtttcttatgagtctatcattcaaatcagc
gcgaaagtccccactctagcccaagtcaaaaaaatcaaagaattgtgccaaaaataccaa
aagaaattagtcagctcttcagaatacgctaaaaaactcaatgcgattgacaagattaaa
aaaactgaagaaaagcaaaaagttttagatgaagaattagaagatggctatgactttttg
aaagaaaaggattttttagagtggagcagaagcgatagcccggtgcgcatgtatttgcgc
gaaatgggggatataaaacttttaagcaaagatgaagagattgaattgagcaagcaaatc
cgcttgggcgaagacattattttagacgcgatttgctcggtgccgtatttgattgatttt
atttatgcgtataaagacgctttaatcaatcgtgaaagaagggttaaggagcttttcagg
agctttgatgatgacgatgaaaatagcgtgagcgattctaaaaaagatgacgacagcgaa
gaagatgaagaaaacgaagaaaggaaaaaagtcgtttctgaaaaagacaggaagcgtgta
gaaaaggttcaagaaagctttaaagccctagataaggctaaaaaagaatggctcaaagcc
cttgaagcccctgtagatgaaaaagaagatgagctagtgcgtttattgaccctagcttac
aaacgccaaacgctcaaagacagactctatgacttagagcctaccagcaaactgatcaat
gaattagtcaaaacgatggaaaccactttaaaaagcggcgatgggtttgaaaaagagttg
aaacgcttggaatacaaactgcccttattcaatgacaccctgatcgctaaccataaaaaa
atccttgccaatatcaccaacatgactaaagaagacattatcgctcaagtcccagaagcg
actatggtgagcgtgtatatggatcttaaaaagctttttttgactaaagaagcgagcgaa
gagggctttgatttagaccctaacaaactaaaagaaattttagagcaaatcaagagaggg
aaattgatttccgatcgcgctaaaaacaaaatggctaaatccaatttaaggttggtggtg
agcatcgctaaacgattcacgagcagaggcttaccattcttggatttgattcaagagggt
aatattggcttgatgaaagcggtggataagtttgagcatgaaaagggcttcaagttttct
acctatgcgacctggtggatcaaacaagctatcagcagagccatagccgatcaagcccgc
actatccgtatccccattcacatgattgacaccattaatcgcatcaataaagtcatgcgc
aaacacattcaagaaaacggcaaagagcctgatttggaagtggtggctgaagaagtgggg
ctttcgttagataaggtgaagaatgtgatcaaggttaccaaagaacctatcagtttggaa
accccagtcggcaatgatgatgacggcaaatttggggatttcgtggaagataaaaatatc
gttagctccattgatcacatcatgcgagaagatttgaaagcacaaattgaaagcgttttg
gatcagttgaatgagcgagaaaaagcggtgatccgcatgcgttttgggcttttagacgat
gagagcgatcgcactttagaagaaatcggcaaggaattgaacgttactagagaaagggtg
cgccagattgaaagctctgcgattaaaaaattgagaagcccgcaatacgggcgcatttta
agaaactatttgcgcatttga
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