Helicobacter pylori Shi417: HPSH417_01245
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Entry
HPSH417_01245 CDS
T02039
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hhr
Helicobacter pylori Shi417
Pathway
hhr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPSH417_01245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhr03019
]
HPSH417_01245
03009 Ribosome biogenesis [BR:
hhr03009
]
HPSH417_01245
Enzymes [BR:
hhr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPSH417_01245
Messenger RNA biogenesis [BR:
hhr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPSH417_01245
Ribosome biogenesis [BR:
hhr03009
]
Prokaryotic type
rRNA helicases
HPSH417_01245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
AAA_30
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AFH97404
LinkDB
All DBs
Position
244106..245584
Genome browser
AA seq
492 aa
AA seq
DB search
MEFNQPPLPTEVDDDAYHKPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDV
IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKHTRTKTVC
VYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLD
DIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVIN
EHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASI
MAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL
VTPLEYKELLRMQKEIDSKIELFEIPTINENQIIKTLHDAKVSEGIISLYEQLTEIFEPS
QLVLKLLSLQFETSKIGLNQQEIDAIQNPKEKTPKTPNKKTHQHEQARSFKKGQHKDRHP
KTNHHSKKPKRR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaatcaaccaccactccctacagaagttgatgatgacgcttaccataagccg
agttttaatgatttgggcttaaaagaatcggttttaaaatccgtttatgaagccggtttc
acttccccaagccccattcaagaaaaggccattccggctgttttgcaaggcagagatgtt
attgcgcaagcccaaacaggcacaggaaaaaccgccgctttcgctctgcccattatcaac
aaccttaaaaacaaccacaccatagaggccttagtgatcacgcccactagagaattagcc
atgcaaattagcgatgagattttcaaattaggcaaacacaccaggactaaaaccgtgtgc
gtgtatggaggccagagcgttaaaaagcaatgcgaatttattaagaaaaacccccaagtg
atgatcgctacaccaggaaggttgctagatcatttaaaaaacgaacgcatccataaattt
gtgcctaaagtggtcgttttagatgaaagcgatgaaatgctggatatggggtttttagac
gatattgaagagatttttgactacctccctagcgaagcgcagattttgcttttttcagcc
acgatgccagagccgattaaaagactagcggataagattttagaaaaccctattaaaatc
catatcgctccttctaatatcactaacactgacatcacccaacgcttttatgtgatcaat
gagcatgagagggctgaagcgatcatgcgccttttagacacccaagcgcccaaaaagagt
attgttttcacgcgcaccaaaaaagaagccgatgaattgcaccaattccttgcttctaaa
aattacaaaagcaccgccttgcatggagatatggatcaaagggatcggcgcgcttctatc
atggcgtttaaaaaaaatgacgctgatgtgttggtggctacagatgtggcgagccgtggg
ctagatattagcggtgtaagccatgtgttcaattaccacttgcccctaaacaccgagagc
tatatccatcgcatcgggagaaccgggcgagcgggcaaaaaaggcatggcaatcacttta
gtaacccccttagaatacaaagagcttttacgcatgcaaaaagaaattgattcaaaaatt
gagctttttgaaatccccaccattaacgaaaatcagatcatcaaaaccttacatgacgct
aaagtgtctgaagggatcatcagtctttatgaacagcttactgaaatttttgagccgtct
caattggttttaaaacttttgagtttgcagtttgaaaccagcaaaattggcttaaaccag
caagaaattgatgcgattcaaaaccctaaagaaaaaacgccaaaaacccctaacaaaaaa
acgcaccagcatgagcaagcgcgttctttcaaaaaaggtcagcacaaagacagacaccct
aaaacaaaccaccattctaaaaaacccaaacgccgttaa
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