KEGG   Helicobacter pylori Shi417: HPSH417_02500
Entry
HPSH417_02500     CDS       T02039                                 
Name
(GenBank) cag pathogenicity island protein cag alpha
  KO
K03196  type IV secretion system protein VirB11 [EC:7.4.2.8]
Organism
hhr  Helicobacter pylori Shi417
Pathway
hhr03070  Bacterial secretion system
Module
hhr_M00564  Helicobacter pylori pathogenicity signature, cagA pathogenicity island
Brite
KEGG Orthology (KO) [BR:hhr00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    HPSH417_02500
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:hhr02044]
    HPSH417_02500
Enzymes [BR:hhr01000]
 7. Translocases
  7.4  Catalysing the translocation of amino acids and peptides
   7.4.2  Linked to the hydrolysis of a nucleoside triphosphate
    7.4.2.8  protein-secreting ATPase
     HPSH417_02500
Secretion system [BR:hhr02044]
 Type IV secretion system
  Conjugal DNA-protein transfer (VirB/D) protein
   HPSH417_02500
SSDB
Motif
Pfam: T2SSE DEAD ResIII nSTAND3 AAA_7 ABC_tran AAA_19 ATP_bind_1 FtsK_SpoIIIE Mg_chelatase AAA_22 Pox_A32 DUF87 TrwB_AAD_bind Septin AAA_16 TsaE Viral_helicase1 NACHT IPPT AAA_33
Other DBs
NCBI-ProteinID: AFH97653
LinkDB
Position
complement(500928..501923)
AA seq 331 aa
MTEDRLSAEDKKFLEVERALKEAALNPLRHATEELFGDFLKMENITEICYNGNKVVWVLK
NNGEWQPFDVRDKKAFSLSRLMHFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSP
VTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKEGIAIGKNVIVCGGT
GSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMR
PDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNNAARNIKFE
SLIEGFKDLIDMIVHINHHKQCDEFYIKHRQ
NT seq 996 nt   +upstreamnt  +downstreamnt
atgactgaagacagattgagtgcagaagataaaaaatttctagaagtagaaagagcttta
aaagaagcagcattaaatcctttaaggcatgctactgaagaactttttggtgatttttta
aaaatggaaaatatcactgagatttgttacaatgggaacaaggttgtatgggttttaaaa
aataatggcgaatggcaaccatttgatgtgagagacaagaaagcctttagtctatctcgt
ttaatgcattttgctcggtgttgtgcaagttttaagaaaaaaacaatagacaactatgaa
aatcctattttgagcagcaatttagcgaatggtgaaagggtgcaaattgtcctttcccct
gttacagttaatgatgaaaccatttccatatccataaggatacctagcaaaacaacctat
cctcatagcttctttgaagaacagggtttttataatctgctagataacaaagaacaagcg
atcagcgcgattaaagaaggtattgctatcggtaagaatgtgattgtttgtggtggcaca
ggaagcggtaagacgacttatatcaaaagcatcatggagtttatccctaaagaagaaagg
atcatatccattgaagacaccgaagagattgtattcaaacaccacaagaactacacacag
cttttttttggtgggaatatcacctctgctgattgtttaaaatcatgtttgagaatgcga
cctgatagaatcattttaggagaactcagaagcagtgaggcatatgatttttataatgtg
ctttgtagcggtcataaaggcacgctaaccactctacatgcagggagcagtgaagaagcg
tttattcgtttagccaatatgagttcatctaataacgcagcaaggaatatcaagtttgaa
agcctcattgagggctttaaagatttaattgatatgattgtccatatcaaccaccacaaa
cagtgtgatgaattttatatcaaacataggcagtag

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