Helicobacter pylori Shi417: HPSH417_05265
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Entry
HPSH417_05265 CDS
T02039
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
hhr
Helicobacter pylori Shi417
Pathway
hhr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPSH417_05265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhr03400
]
HPSH417_05265
DNA repair and recombination proteins [BR:
hhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPSH417_05265
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HPSH417_05265
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
Microtub_bd
AAA_7
DUF87
Kinesin
SWI2_SNF2
T2SSE
Motif
Other DBs
NCBI-ProteinID:
AFH98185
LinkDB
All DBs
Position
complement(1099442..1101418)
Genome browser
AA seq
658 aa
AA seq
DB search
MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIANINKPTL
IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER
LRLSAATSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY
SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALEKNEIKRLDSV
MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG
VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK
SVLVEYGFRLPSALDNRPLKFDEFIHKNCQFLFVSATPNKLELELSKNNVAEQIIRPTGL
LDPKFEVRDSDKQVQDLFDEIKLVVARDERVLITTLTKKMAEELCKYYAEWGLKARYMHS
EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT
MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKLHNITPKTVTRALEEELK
LRDDEIKIAKALKKDKIPKSEREKIVKELDKKMRECAKNLDFEEAMRLRDEIAKLRTL
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgcctttatttgatttaaaaagcccttacccaccagcaggcgatcagccccaagccata
gaagccttaacgaaaagcttgaaaaataacaaccattatcaaactttagtgggggttaca
gggagcggtaagacttatacgatggctaatatcatcgctaatatcaacaaacccactctg
atcatgagccataataagaccttatgcgcgcaactctatagcgaatttaaggcgtttttc
ccgcataatagggtggagtattttatctcccactttgactactaccagcctgaaagctat
atccctagaagggatttattcattgaaaaagacagctctattaatgatgatttagagcgt
ttgagattgagcgcggccacctcacttttaggttatgatgatgtgatcgtgatagcgagc
gtttcggctaattatggtttgggtaaccctgaagaatatttaaaagtcatggaaaaaatc
aaagtgggcgagaagcgtgcttataagagctttttattaaagctagtagaaatgggttat
agccgtaatgaagtggtgtttgatagggggagttttagagcgaccggagaatgcgtggat
attttccccgcttataatgacgctgaatttatcaggattgaattttttggcgatgagata
gaaaggattgctgtctttgacgctttagaaaaaaatgaaatcaagcgcttggattctgtc
atgctttatgcggccagtcagtttgctgtagggagtgagaggttgaatttagccattaaa
agcattgaagatgaactcgctttaagattgaaattttttaaagagcaagataaaatgctt
gaatacaaccgcctcaaacaacgcactgagcatgatttagaaatgattagtgcaaccggt
gtgtgtaagggcattgaaaattacgcgcgccattttacaggcaaagcccctaatgaaacg
cctttttgtttgtttgattatttagggatatttgagcgggagtttttagtcattgtggat
gaaagccatgtgagtttgccgcagtttggggggatgtatgcaggggatatgagcaggaaa
agcgttttagtggaatatggttttagattgcctagcgctttagacaaccgccctttaaaa
tttgatgaatttatccataaaaattgccagttcctttttgtgtccgctacgcccaataag
ctagaattagagctttctaagaataatgtcgctgagcaaatcattcgccctacagggctt
ttagaccctaaatttgaagtgcgagacagcgataagcaagtccaggatttatttgatgaa
atcaagttagtggtggctagagatgaaagggtgctcatcaccacgctcactaaaaaaatg
gcagaagaattgtgcaaatattatgctgaatggggcttgaaagcgcgttacatgcatagt
gaaattgatgcgattgaaagaaatcacatcatccgttctttgaggcttaaagaatttgac
attttaatagggatcaatcttttaagagaagggctggatttgcctgaagtctctttagta
gcgatcatggatgcggataaagaagggtttttaaggagtgaaacaagcctcattcaaacc
atggggcgagccgctagaaacgctaatggcaaggttttattatacgctaaaaaaatcact
caaagcatgcaaaaagcctttgaaattacaagctacaggcgcgctaagcaagaagaattt
aataaacttcacaatatcaccccaaaaaccgttactcgcgctttagaagaggagttgaaa
ttaagagacgatgagattaaaatcgctaaagccttaaaaaaggacaaaatccctaaaagc
gaaagggaaaagatcgttaaagaattggataaaaaaatgcgagaatgcgcaaaaaatttg
gattttgaagaagcgatgcgtttgagagatgaaatcgctaaattaaggacgctttaa
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integrated database retrieval system
