Helicobacter pylori Shi417: HPSH417_06130
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Entry
HPSH417_06130 CDS
T02039
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hhr
Helicobacter pylori Shi417
Pathway
hhr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPSH417_06130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhr03019
]
HPSH417_06130
03016 Transfer RNA biogenesis [BR:
hhr03016
]
HPSH417_06130
Enzymes [BR:
hhr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HPSH417_06130
Messenger RNA biogenesis [BR:
hhr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HPSH417_06130
Transfer RNA biogenesis [BR:
hhr03016
]
Prokaryotic type
tRNA degradation factors
HPSH417_06130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_1st
OB_RNR_2nd
Motif
Other DBs
NCBI-ProteinID:
AFH98348
LinkDB
All DBs
Position
complement(1280879..1282813)
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AA seq
644 aa
AA seq
DB search
MQGFLRSLFFGVKKIPKPFAPLIEKGVLKEALGCNKERYFLKEGFDIGRIEWAENKAFFI
SLAKNYPKDPLIKNLPPSFKTDALILCKIECSKKRPIAFFKAALLNADHTIIAYLAKKNH
QIVAIPFKEPFKKPILLKHSQRSLLELPRHCVVKIDLKKREISEILGALEDPLIDENLSL
SLFDRIKDFSKDCLDLAQHYAQLKASDFKNRINYSHLLFITIDPKDAKDFDDAIFYDQEK
RVLFVAVADVSEFVPKYSSLDKEARVRGFSVYFPNSVYPMLPLSLSQGACSLKAFEKRLA
LVYEIPLDNLENARLFQGVIEVRANCTYEEINHFLTTQQSSLDKDLQQSLLGFLEMALKL
KKERLKKGFNFNSFENKLYLNKEGRIEKIETQTESNAHTLIEEAMLLANQSSANLLDKHF
QNKGIYRTHKEPSLEQQKRLYDKLFDYEIMRPKNMGFFPFLEHALKIAKEKKLEREVSRL
IIKSQNLALYSPMQESHFGLGFISYTHFTSPIRRYSDLALHRLLKELLFHQAKGCSYLLE
ETPELCAELNALQKKAALIERDFVKRKFARLALELLEKEFLGVVLEVKDWVVVGLKELIG
LKVLVKTNKVFKSLEKVRVKITHADLVLGQVWGEITERIKEHVS
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcaagggtttttaagaagcctgttttttggggttaaaaagatccctaaaccattcgct
cctctaatagaaaagggcgttttaaaagaagcgcttggatgcaacaaggaacgctatttt
ttaaaagaaggctttgatataggcagaattgagtgggcagaaaataaggcgtttttcatt
tctttagcgaaaaattaccccaaagaccctttaatcaaaaacttacccccatcttttaaa
acagacgctttgattttatgcaaaatagaatgttctaaaaaacgccccatagcctttttt
aaagccgcgcttttaaatgcagatcacacgataatagcttacctggctaaaaaaaatcac
cagattgtggctatcccttttaaagagccttttaaaaaacccattcttttaaagcacagc
caaagatccttattagaattgcccaggcattgcgtggtaaagatcgatcttaaaaagcgt
gaaatcagcgaaattttaggggctttagaagaccctttaatagatgaaaacctttcttta
agcctttttgacaggattaaggatttttcaaaagattgtttggatttagcccaacattat
gcgcaacttaaagcgagcgattttaaaaataggatcaattattctcacctcctttttatc
accattgatcctaaagacgctaaggattttgacgatgcgattttttatgatcaagaaaaa
agggttttgtttgtggcggttgctgatgtgagcgaatttgtgccgaaatattccagtttg
gataaagaagctagggttaggggctttagcgtgtatttccctaatagcgtgtatcccatg
ctgcctttgagtttgtctcaaggggcatgctcactaaaagcgtttgaaaaacgcctggct
ttagtgtatgaaatccctttagataatttggaaaacgcccgattgtttcaaggcgttatt
gaagttagggctaattgcacctatgaagaaatcaaccattttttaaccacccaacaaagc
tcgttagataaagacttgcaacaaagccttttggggtttttagaaatggctttaaagtta
aaaaaggagcgtttaaaaaaggggtttaatttcaattcgtttgaaaacaagctgtatttg
aataaagaagggcgtatagaaaagattgaaacgcaaacagaaagcaacgcgcacaccctt
atagaagaagccatgctattggccaaccaatctagcgcgaatttattggataagcatttt
caaaataaggggatataccgcacccataaagagccaagtttggagcagcaaaaacgcctc
tacgacaagctttttgattatgagatcatgcgccctaaaaacatgggctttttccctttt
ttagagcatgccttaaagatagccaaagaaaagaagttagaaagagaagtttcgcgctta
atcattaaatctcaaaatttagccctttatagccccatgcaagaaagccattttggtttg
gggtttattagctatacgcatttcacttcgcccattagacgatacagcgatttagcctta
cacaggcttttaaaagaattgttgtttcatcaagctaaaggctgctcgtatttgttagaa
gaaacgcctgaattgtgtgctgagttgaacgctttacaaaaaaaggccgctttgattgaa
agggattttgtcaaacgcaaattcgcccgcttagctttagaacttttagaaaaagaattt
ttgggcgttgttttggaggttaaagattgggtggtggtggggctaaaagaattaataggg
cttaaagttttagtcaaaacgaacaaggtttttaagtctttagaaaaggtgcgcgttaaa
atcacgcatgcggatttggttttagggcaagtttggggcgaaatcacagaaaggattaaa
gagcatgtatcgtaa
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