Helicobacter pylori Shi417: HPSH417_06620
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Entry
HPSH417_06620 CDS
T02039
Name
(GenBank) uracil-DNA glycosylase
KO
K03648
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
hhr
Helicobacter pylori Shi417
Pathway
hhr03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HPSH417_06620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhr03400
]
HPSH417_06620
Enzymes [BR:
hhr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
HPSH417_06620
DNA repair and recombination proteins [BR:
hhr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
HPSH417_06620
Prokaryotic type
HPSH417_06620
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
AFH98444
LinkDB
All DBs
Position
complement(1360007..1360708)
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AA seq
233 aa
AA seq
DB search
MKLFDCAPLSLAWREFLQSEFKKPYFLEIEKRYLEALKSTKTIFPKSSNLFYALNLTPPS
AVKIILLGQDPYHSTYLKNQQELPVAMGLSFSVEKNAPIPPSLKNIFKELHANLGVPVPC
CGDLSAWAKRGMLLLNAILSVEKNQAASHKRIGWEAFSDQILMRLFEANAPLIVVLLGKI
AQKKIALIPKNKHTIITAPHPSPLSRGFLGSGVFTSIQNAHREVYHKDFDFSL
NT seq
702 nt
NT seq
+upstream
nt +downstream
nt
atgaaactttttgactgcgctcctttaagtttggcttggcgggagtttttgcaaagcgaa
tttaaaaagccttattttttagaaatagaaaaacgctacttagaagctctaaaaagcact
aaaaccattttccctaaaagctccaatctgttttatgcgctcaatctaacgccccctagc
gcggttaaaatcatccttttagggcaagatccctaccattccacctacctaaaaaatcag
caagaattgcctgtggcgatgggtttaagctttagcgtggaaaaaaacgcccccatcccc
ccaagcttaaaaaatatttttaaagaattgcatgcgaatttaggcgtgcctgtgccttgt
tgtggggatttgagcgcatgggctaaaaggggcatgctgttgttgaacgccattttaagc
gtggaaaaaaaccaagccgcttcgcacaaacgcatcggctgggaagcttttagcgatcaa
atattgatgcgcctttttgaagccaacgcccccttgatcgtggtgttattaggaaagatc
gcgcaaaaaaagatcgctctaatccccaaaaacaagcacaccatcatcactgcccctcac
cctagccccttatctagggggtttttagggagtggggtttttacaagcatccaaaacgcc
cacagagaggtttatcataaggattttgattttagtttatga
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