Helicobacter pylori Shi417: HPSH417_07210
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Entry
HPSH417_07210 CDS
T02039
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hhr
Helicobacter pylori Shi417
Pathway
hhr03420
Nucleotide excision repair
hhr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hhr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPSH417_07210
03430 Mismatch repair
HPSH417_07210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhr03400
]
HPSH417_07210
Enzymes [BR:
hhr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPSH417_07210
DNA repair and recombination proteins [BR:
hhr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPSH417_07210
MMR (mismatch excision repair)
Other MMR factors
HPSH417_07210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
PcrA_UvrD_tudor
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AFH98558
LinkDB
All DBs
Position
complement(1481207..1483252)
Genome browser
AA seq
681 aa
AA seq
DB search
MDFEKSILDNLNEAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLT
LTFTNKASKEMQERALKLLENQTLIPPLLCTFHRFGLLFLRQHMNLLKRACDFSVLDGDE
VKTLCKQLKISSFRASISQIKNGMVDLSMQDSECHKAYELYQNALKKDNLVDFDDLLFLS
LKILQDNETIAKETSERYHYIMVDEYQDTNALQLEFLKKLSFTHHNLCVVGDDDQSIYGF
RGADISNILNFSKHFKGAKVVKLETNYRSSAEILACANSLISHNQHRHKKTLQSFKGSHK
SVVCKEYLTQKEESLDVAYQIKALLKKGENLENIAILYRLNGLSRSIEESLNALNIPYRL
IGAVSFYERAEVKDALAFMHLVAKKDDRFFIKRVLNKPSRGLGKITQEWIFSLLDGEGLN
LEEVLKLGVFKGKLNPKNEHALNKFIAMIGRLREAFEISVEEFCARFLEETNLLKSYEKE
DNYEEREGFVKELLALVKEHFKTNPTHSLLDFLNESVLDTHNTENAQKVSCMSVHMSKGL
EFKHVFVIGLEEGFFPHRGFNQESDLEEERRLAYVAITRAKEGLQLSYVQERSYFGRKIS
CSPSVFLEEAKLLKQDNPPKQDHKKDTPIKVGDLIRHKIFGTGRVLGVEKGLSGLCLKIN
CGGNVYDKISVKFVEKVDNGF
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggattttgaaaaaagcattttagacaatttgaacgaagcgcaaaaaatcgctgcaagc
cacattcaagggcctttgctgattttagcgggagctgggagcggtaagactaagacttta
acgagccgtttagcgtatttgattggcgcttgtggcgtgcctagcgagaacactttaacg
ctcactttcaccaataaagcgagtaaagaaatgcaagaaagggctttgaaattgttggaa
aaccaaacccttatcccccccttgctttgcactttccatcgttttggtttgctgttttta
aggcaacacatgaaccttttaaaaagagcgtgcgatttttcggtgttagatggcgatgaa
gtaaaaacgctgtgcaaacagcttaaaatttcaagctttagagccagtatttctcagatc
aaaaacggcatggttgatttaagcatgcaagatagcgaatgtcataaagcgtatgagctt
taccaaaacgcgcttaaaaaagacaatttagtggattttgacgacttgctttttttaagc
cttaagattttgcaagataatgaaaccatcgccaaagaaactagcgagcgctaccattac
attatggtagatgagtatcaagacacgaacgccttgcaattagaatttttaaaaaaattg
agtttcacgcaccataatttgtgcgtggtgggcgatgacgatcagagtatttatggtttt
aggggggctgatatttctaacattttaaatttttccaagcattttaaaggggctaaggtg
gtgaaattagaaaccaactaccgctccagcgctgaaattttggcgtgcgctaactccctt
attagccataaccaacaccgccacaaaaaaacgcttcaaagttttaagggttcgcataaa
agcgtggtttgtaaggaatatttgacgcaaaaagaagagagcttagatgtggcttatcaa
atcaaagcccttttaaagaagggcgaaaatttagaaaatatcgctattttgtaccgctta
aacgggcttagccgcagcattgaagagagcttgaacgctttgaatatcccctataggctt
attggagcggtaagtttctatgaaagagcagaggttaaagacgctttggcgttcatgcat
ttagtggctaaaaaagacgatcgcttttttattaagcgcgttttaaacaagccctcaaga
ggccttggcaagatcactcaagaatggattttttctcttttagatggtgaaggtttgaat
ttagaagaagtgctaaaacttggggtgtttaaaggcaaattaaaccctaaaaacgaacac
gctttgaataaatttatcgctatgatagggcgtttgagggaggcttttgaaatttcagta
gaggagttttgcgctcggtttttagaagaaaccaaccttttaaaaagctatgaaaaagaa
gacaattacgaagaaagagagggctttgttaaagagcttttagctttagtgaaagagcat
tttaaaactaaccccacgcattctttattggattttttgaatgaaagcgttctggatacc
cataatacagaaaacgcgcaaaaagtgagttgcatgagcgtgcatatgagtaaggggtta
gagtttaagcatgtgtttgtgatcgggttagaagaagggtttttcccgcatagggggttc
aatcaagaaagcgatttggaagaagaaaggcgcttggcttacgtagcgatcactagggct
aaagaaggattgcagctctcttatgttcaagagcgttcgtattttgggaggaaaatttct
tgctcgccctctgtgtttttagaagaagccaagttgctcaagcaagacaacccccctaaa
caggatcacaaaaaagatacgcccattaaggtgggggatttgatcaggcataagattttt
ggcaccggtagggttttaggcgtagaaaaaggcttgagcggtttgtgcttgaaaatcaat
tgcggagggaatgtctatgataaaatctcagtaaaatttgtagaaaaagtggataacggg
ttttga
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