Helicobacter pylori Shi417: HPSH417_07575
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Entry
HPSH417_07575 CDS
T02039
Name
(GenBank) type IV secretion system protein VirD4
Organism
hhr
Helicobacter pylori Shi417
Pathway
hhr03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
hhr00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
HPSH417_07575
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
T4SS-DNA_transf
TraG-D_C
TrwB_AAD_bind
Motif
Other DBs
NCBI-ProteinID:
AFH98631
LinkDB
All DBs
Position
complement(1575473..1577620)
Genome browser
AA seq
715 aa
AA seq
DB search
MKMQFVKAFCVLFSILLIPLFFILANYYVFDAINSFRQAYFFSQSVFIGLYKGASILDLK
FEVYITMIMSLMPLVATIYMSIQKTKETSHGYARWANVKDIECFKVFSKEGFCKVVHRLG
VQFDKGFILGKFGFPKLRDVCYDKPLGAMIVAPPGAGKTACVALPNLLTLPNSCIITDIK
GELRDKTAGYRQKFLNNRILIFNPYGDDNTCYFNPFDKRIVKPMNFDQRLRLVQENANNV
FISEEKGEDHWVSKAKDLFSFYALHDVCSKDETNFFDVAMGPNRDYVNLIDKRSRYYKQL
YQHDKKTGEIILDPQTNEPILIPNVNARKLWYLQVSEQKYADPKDPRNFDPNEPEPAPRS
EGALDEIVRNDARAWANSAEEEFASIISTFNRFVSVFKSNQVRIATSKMSFDYEELRTDN
ISLYIVIAQKDINTLAPLVRVILESIAKNLLTNESSKKEERIYMILDEFVRFGKLPFLLE
MPALCRSYNVVPLFITQDYAMIRKNYSDDDLKILKGVVHYNIVFKMNSAEDAEIVSKEVG
EFTRQSKNYSTEKGQLVFGGSSSYSHEGRNLLTAQDIMNIKSDEVIVIVTGAKATPLKLK
ANYWFRDKELLKRANLPIDLEVERKRFKESTQPTTSQKESENSNLTESEKDNENPTTSQE
KNKNENTEQENHNEIDEILKKPLSEISMEEKRALFKKMQQGDEQSEQEVLQDTQS
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgcaatttgtgaaagctttttgcgtgctttttagcattttacttatcccctta
ttttttatcttggcaaattattatgtttttgatgccataaattcgtttagacaggcttat
ttcttttctcaaagcgtgtttatagggctttataagggagcgagtatcttagatttaaaa
tttgaagtctatatcactatgataatgtctttaatgcccttagtagctacgatttatatg
agtattcaaaagactaaagaaacttcgcatggctatgcgagatgggctaatgttaaagac
atagagtgctttaaagtctttagtaaagagggcttttgtaaggtagtgcatagattaggg
gtgcaatttgacaagggctttattctaggtaaatttggttttccaaaacttagagatgtg
tgttatgacaagcccttaggagccatgattgttgcaccccctggagctggtaaaaccgca
tgcgtggctttacccaatttattgactttacctaatagctgtattatcactgatattaaa
ggcgaactaagagataagactgctggatatagacaaaaattcttaaacaataggatttta
atctttaatccctatggtgatgataatacttgttatttcaatccttttgataaaaggatt
gtaaaacccatgaactttgaccaacgcctaagacttgtgcaagagaatgctaataatgtc
tttattagcgaagaaaagggcgaagaccattgggtatctaaagcgaaagatttgtttagc
ttttatgccttgcatgatgtttgttccaaagatgaaacaaacttttttgatgtggctatg
ggtccaaatagagactatgtcaatttaattgataaaagaagtcgctattacaaacagctc
tatcagcacgacaaaaagacaggcgaaattatcctagacccacaaactaatgagcctatt
ttaattcctaatgtgaatgcgagaaaattgtggtatttgcaagtttcagagcaaaaatac
gctgaccccaaagaccctagaaattttgacccaaatgagcctgaaccagcccctagaagt
gaaggggcgttagatgaaattgtaagaaatgatgcaagagcgtgggctaatagtgctgaa
gaagaatttgcaagtattatttctactttcaatcgctttgtgtctgtttttaaaagcaat
caagtaagaattgctacttctaaaatgagctttgattatgaagaattaagaacagacaat
atcagtctttatattgtgattgctcaaaaagacatcaacacgcttgcccccttagttaga
gtgattttagaaagtattgctaaaaacttactaactaatgaaagttctaaaaaagaagaa
cgcatttatatgattttagatgaatttgttagatttggtaagttgcctttcttgttagaa
atgcctgcactttgtcgctcttataatgtcgttcccttattcatcacgcaagattatgcg
atgattagaaaaaattatagcgatgatgatttgaaaatcttaaaaggcgtggtgcattat
aacattgtctttaagatgaatagcgctgaagatgctgagattgtttctaaagaagtgggc
gaattcactagacaatctaaaaattattctactgaaaagggtcagctagtctttggaggc
agttcttcttatagccatgagggtagaaatttacttacagctcaagacattatgaatata
aaatcagatgaagttattgtcattgttacaggagctaaagcgacccctttaaaacttaaa
gctaattattggtttagagataaagagcttttaaaaagagctaacttgcctattgactta
gaagtagaaagaaaaagatttaaagagtctacgcaacccactacttcacaaaaagagagt
gaaaattcaaatctaacagaaagcgagaaagataatgaaaaccccactacttcacaagaa
aaaaacaagaatgaaaacacagagcaagaaaatcacaatgaaattgatgagattttaaaa
aagccactgagtgaaatcagcatggaagaaaaaagagccttatttaagaaaatgcaacaa
ggcgatgaacaaagcgaacaagaagttctacaagacacccaaagttaa
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