Candidatus Pantoea carbekii: HHS_01450
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Entry
HHS_01450 CDS
T02865
Name
(GenBank) hypothetical protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hhs
Candidatus Pantoea carbekii
Pathway
hhs03410
Base excision repair
hhs03430
Mismatch repair
hhs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hhs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HHS_01450
03430 Mismatch repair
HHS_01450
03440 Homologous recombination
HHS_01450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhs03400
]
HHS_01450
DNA repair and recombination proteins [BR:
hhs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HHS_01450
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HHS_01450
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HHS_01450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
BAO00115
UniProt:
U3U5J9
LinkDB
All DBs
Position
204465..206213
Genome browser
AA seq
582 aa
AA seq
DB search
MRSIKDPLVELRRRKVEVNTNLLIDLPPLLRQIYLHRGIKKTSDIERSTKYLLPWHGLNN
INSAVRLLYKMLQTERRVLVVGDFDADGATSTALTVLALRSMGGNIDYLLPNRFKDGYGL
SPKVVQKARNRGAEMILTVDNGISSYAGVETCHRYGIPVLVTDHHLPNAKLPLAEAIVNP
NLLNSTFPSRSMAGVGVAFYLMVALRAYLKKHNWFNNSRSEPNLAELLDLVAIGTIADLA
PLDCNNRILVWQGLMRIRAGKCRKGIRALLNLCKCNINQLVENDLAFNIGPRLNAAGRLD
DMSVGVALLLSNTNTEAKILANKLDMFNQTRKKIEYHMQRDALAMCNMFQAQYKVLPQGL
VFYSSNWHQGVIGVLASRLKERFRRPVIAFAPAEQGVLKGSGRSISGLHLYNVLKRLNSL
FPSLIIEFGGHSMAVGLCIEEVKYKEFCKQFVILINQCLKGKSFQDIIWSDGELNVQQFS
LNTAQMLREAGPWGQAFPEPIFDGKFKLLQQRLVGGNHLKVIVCPLDGNSKAFLHGIVFN
VDTNKWPNYRVYQITMAYKLGINEYRGNKLIQLNIHYIWPQI
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
ttgagatctattaaagatcctttagtcgaactgcgcaggcgtaaagttgaggttaatact
aatttactcattgatttacctccgttattgcgtcaaatttatctccatcgcgggataaaa
aaaacaagcgatattgagcgtagtaccaaatatttgctaccttggcatggacttaataat
attaatagtgcggttagattattgtataagatgctgcaaaccgaaagacgagtcttggta
gtaggtgatttcgacgctgatggtgctaccagtaccgctttaactgtgttagcgttacgt
agcatgggaggtaatattgattatttattaccaaatcgctttaaagatggatatggtctc
agcccaaaagtagttcaaaaagcacgaaatcgtggtgctgaaatgattctcactgtagat
aacggcatttcatcatatgctggtgttgagacatgtcaccgatatggaattcccgtatta
gtaaccgatcatcacctgcctaatgcaaaattgcctttagctgaagctatagtaaatcct
aatttgcttaatagtacttttccatcgcgttcaatggccggtgtaggtgtagctttttat
cttatggttgcacttcgtgcttacttaaaaaaacataattggtttaacaatagccgttca
gagcccaatctagcagaattacttgatttagtggcaattggcactattgctgatctggca
cctcttgattgtaataaccgtattttagtatggcaaggtttaatgcgtattcgtgcaggt
aaatgtcgaaaagggatacgtgccctattaaatctttgtaaatgcaatataaatcaatta
gttgaaaatgatcttgcttttaatatcggaccaagactgaacgctgccgggcgtttagat
gatatgtcagtcggtgttgcattattgctcagcaatactaatacagaagcaaaaatatta
gctaataaactcgatatgtttaatcaaactcgaaaaaaaattgaatatcatatgcagaga
gacgctttagctatgtgcaatatgttccaagcacaatataaagttcttccacagggttta
gtattttatagttctaattggcatcaaggagtaataggcgttttagcatcacgtttaaaa
gaacgttttcgtcgcccagtaattgcctttgcacctgctgaacaaggagtgctaaaaggt
tctggtcgttcaatttccggtttgcatttgtataatgtgctaaaacgtcttaatagtttg
ttccctagcttgattatcgaatttggtgggcattctatggcagttggtttatgtatagaa
gaagttaaatataaagaattttgtaagcaatttgttatactgattaaccaatgcttaaaa
ggaaaatcttttcaagatataatctggtctgatggcgaattaaatgtacagcaattttca
ttgaatactgctcaaatgctacgtgaagctggtccatgggggcaagcatttccagaacct
atatttgatggcaaattcaaattattacaacaacgtttagtagggggaaaccatctcaaa
gttattgtgtgcccgcttgatggaaatagcaaagcatttctacatggtatagtttttaat
gttgatactaataaatggccgaattacagagtataccagataactatggcatataaactt
gggattaatgaatatcgtggcaataaattgattcaattaaatatacattatatatggcct
cagatataa
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