Candidatus Pantoea carbekii: HHS_04560
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Entry
HHS_04560 CDS
T02865
Symbol
pcnB
Name
(GenBank) poly(A) polymerase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
hhs
Candidatus Pantoea carbekii
Pathway
hhs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HHS_04560 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhs03019
]
HHS_04560 (pcnB)
Enzymes [BR:
hhs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
HHS_04560 (pcnB)
Messenger RNA biogenesis [BR:
hhs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HHS_04560 (pcnB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
Gad2
Motif
Other DBs
NCBI-ProteinID:
BAO00426
UniProt:
U3U2Q7
LinkDB
All DBs
Position
615768..617111
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AA seq
447 aa
AA seq
DB search
MKTENSINIIPRKKHNISRRDISSNALKVLYRLNKSGYEAYLVGGSVRDLLLGKKPKDFD
ITTNATPEQMRKLFRNCRLVGRRFRLAHVMFGLEVIEVATFRGPHQYTNIANRNRCQCQK
NGMLLRDNIFGSIEDDAQRRDLTINSLYYSISDFSVRDYVGGFQDLKTGIIRLIGDPETR
YREDPVRMLRVIRFAAKLNMQIHIETAKPIVNLVTLLKNIPPARLFEESLKLLQTGFGLN
TYMMMREYQLFQPLFPILAQGFTTQGNSVMERLLIQVFKNTDIRINNQMNVNAAFLFAAM
FWYPQLELAQRIVQKNSVSYHDASILAINEILDGVCKTLAIPKRITTLIRDIWHLQLRMS
RRHGKYAWKLMEHPKFRAAYDLLVLRANIEKNQQLQHLSCWWTEFQSAVLTQQKNMLSKI
GNEPLMYRNSTKLNYCDINYNNRSSST
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaactgaaaattcaattaacattattcctcgaaaaaaacataatatctctcgtaga
gatattagcagtaatgcattaaaggttctctatcgtttgaataaatccgggtatgaagcg
tacttagtaggcggtagcgtacgtgatttacttttaggtaaaaaaccaaaggattttgat
attactactaatgctacacctgaacaaatgcgtaaactatttcgtaattgtcgtttagtt
ggacgtcgttttcgtttagcacacgttatgtttggacttgaagtgatagaagttgctaca
tttcgtggtcctcatcaatatacaaacatagcaaatcgcaatcgttgtcagtgtcaaaaa
aacggcatgttattacgtgataatatttttggtagtattgaagatgatgcacaacgtcgt
gatcttactattaatagtctatattatagcatatcggattttagcgtgcgtgattatgtt
ggaggttttcaggatttaaaaacaggaattatccgtttaattggcgatccagaaacacgt
tatcgtgaagatcctgtacgcatgctacgtgtaatacgttttgctgctaaattgaatatg
caaattcatattgaaactgctaaacctattgtcaatttagtaacattactgaaaaacatt
ccgcctgcacggttatttgaagaatctcttaaattattacaaactggtttcggtttaaat
acttacatgatgatgcgtgaataccaattatttcaaccattatttccaatactcgctcaa
ggctttacaactcaaggaaatagtgtaatggaacgtttactaatacaggtatttaaaaac
acggatattcgtattaataaccagatgaatgtaaatgctgcatttttatttgctgccatg
ttttggtatccgcaattagagctagcgcagcgaattgtacaaaaaaatagtgtttcttat
cacgatgcttctatattagcaattaatgaaatactagatggagtgtgtaaaacattagca
attccaaagcggattactacattaattcgtgatatctggcatttacagttgcgtatgtcg
cgtcgtcatggtaaatatgcatggaaattaatggaacacccaaagttccgtgctgcctat
gatttactagtcttacgtgctaatattgaaaaaaatcagcaattacaacatcttagttgt
tggtggacagaatttcaatcggctgtattaacgcagcaaaaaaatatgctaagtaaaata
ggtaatgaacctctaatgtatcgaaattctacaaaattaaactattgtgatataaactat
aacaatcgtagcagcagtacataa
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