Halodesulfurarchaeum formicicum HSR6: HSR6_1605
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Entry
HSR6_1605 CDS
T04550
Symbol
rpoB1
Name
(GenBank) DNA-directed RNA polymerase subunit B'
KO
K03044
DNA-directed RNA polymerase subunit B' [EC:
2.7.7.6
]
Organism
hhsr
Halodesulfurarchaeum formicicum HSR6
Pathway
hhsr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hhsr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HSR6_1605 (rpoB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhsr03021
]
HSR6_1605 (rpoB1)
Enzymes [BR:
hhsr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HSR6_1605 (rpoB1)
Transcription machinery [BR:
hhsr03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
HSR6_1605 (rpoB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
DUF5816
Zn_ribbon_NOB1
Zn_ribbon_NUD
RNA_pol_Rpb2_45
Auto_anti-p27
DUF5817
Motif
Other DBs
NCBI-ProteinID:
APE96046
UniProt:
A0A1D8S5S4
LinkDB
All DBs
Position
complement(1545961..1547787)
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AA seq
608 aa
AA seq
DB search
MSQGRDAKVYVNGSLVGTHPDPEGLAAQIREARRRGDVSEMVNVSVSERTDEVIVNADAG
RARRPLLVVEDGDSLVTEADVEAVQNGDLEFEDLVEAGKIEYIDAEEEEDILVAVDEDEL
TEDHTHLELDPQLIFGIGAGMVPYPEHNASPRITMGAGMMKQSLGLPAANYRIRPDTRQH
LMHYPQKAMVNTQTTEQIGYDERPAGQNFVVAVMSYEGFNIEDALVMNKGSVERGLARSH
FFRTYEGEERRYPGGQEDRFEIPDTDVRGSRGEDAYTHLDEDGLVNPETVVDESSVLLGK
TSPPRFLEEPDDMGGLSPQKRRETSVTMRSGEDGVVDTVTLMEGEDGSKLAKVSVRDERI
PELGDKFASRHGQKGVVGHLAPQEDMPFTEQGVVPDLVLNPHALPSRMTVGHVLEMLGGK
AGSLEGRSVDGTPFTGEDEEELRDSLVEHGFKSSGKEVMYSGVTGEKIEAEIFVGTIFYH
KLYHMVSNKIHARSKGPVQVLTRQPTEGRAREGGLRLGEMERDTVIGHGAAMVLKERLVD
SSDKEYIHVCGNCGMTAVENANERRVYCPNCGEETDVHEIEMSYAFKLLLDEMKALGIAP
RLELEDAV
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagggacgagacgcgaaagtctatgtcaacgggagcctcgtggggacccatccg
gaccccgaggggctcgcagcacagattcgagaggcacgacgccgcggggacgtaagcgag
atggtcaacgtctcggttagcgaacggaccgacgaggtcatcgtcaacgccgacgccggc
cgggcccgtcgcccgcttctggtcgtcgaggacggcgactcgctggtgaccgaagccgac
gtcgaggccgtgcagaacggggacctggagttcgaggacctcgtcgaggccggcaagatc
gagtacatcgacgccgaggaggaggaagacatcctcgtcgcggtcgacgaggacgaactc
accgaggatcacacacatctggaactggacccacagctcatcttcggtatcggggccggg
atggttccgtaccccgagcacaacgcctcgccgcgcattacgatgggtgcagggatgatg
aaacagtccctggggctgccggcggcgaactaccggattcgcccggacacccgccagcac
cttatgcactacccccagaaggcgatggtcaatactcagaccaccgagcagatcgggtac
gacgaacggccggccggtcagaacttcgtcgtcgcggtcatgtcctacgaggggttcaac
atcgaggacgccctggtcatgaacaaaggctccgtcgagcgcggcctcgcccgctctcat
ttcttccgcacctacgagggcgaggaacggcgctacccaggcggccaggaggaccgcttc
gagatcccggacacggacgtccgtggctctcgcggcgaggacgcctacacgcatctggac
gaggacggtctcgtgaatcccgagaccgtcgtcgacgagagttccgtgctgcttggaaag
acctctccaccacgcttcctcgaagagccggacgacatgggcggactcagcccgcagaag
cgccgggagacctcggtcaccatgcggtccggggaggacggggtcgtggacacggtcacg
ctgatggagggcgaagacggctcgaagctcgcgaaagtctccgtgcgtgacgagcgaatc
cccgaacttggggacaagttcgcgtcgcgacacggccagaagggcgtggtgggccacctt
gcgccccaggaggacatgcccttcaccgaacagggtgtcgttcccgacctggtcctgaac
ccacacgccctgccgtcacggatgacggtcggccacgtgctggagatgctcggcgggaaa
gccgggtccctcgagggccgaagcgtcgacggaacgccctttacgggcgaggacgaggag
gaacttcgcgacagcctggtggaacacggattcaagtcctccgggaaggaggtcatgtac
tccggtgtcaccggcgagaagatcgaggccgagatcttcgtcggcaccattttctatcac
aaactctaccacatggtgtcgaacaagatccacgcccggtcgaagggaccggtgcaggtc
ctgactcgccagcccacggaggggcgtgcccgcgagggtggccttcgcctgggtgagatg
gagcgtgacaccgtcatcggtcacggtgcggccatggtgctcaaagagcgcctggtggac
tcctcggacaaggagtacatccacgtctgtggcaactgtggcatgaccgcagtggagaac
gcgaacgaacgacgggtgtactgcccgaactgtggggaggagaccgacgtccacgagatc
gagatgagctacgccttcaagctcctgctcgacgagatgaaggcccttggaatcgctccc
cgactcgaactggaggacgccgtataa
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