Herbaspirillum hiltneri: F506_01825
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Entry
F506_01825 CDS
T04039
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
hht
Herbaspirillum hiltneri
Pathway
hht03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
F506_01825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hht03400
]
F506_01825
Enzymes [BR:
hht01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
F506_01825
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
F506_01825
DNA repair and recombination proteins [BR:
hht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
F506_01825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DUF4859
Motif
Other DBs
NCBI-ProteinID:
AKZ61576
LinkDB
All DBs
Position
405816..406646
Genome browser
AA seq
276 aa
AA seq
DB search
MPELPEVEVTRRGVAPHLEGQTVAGVVTRHSGLRWPFPSDLNERLAGHVIRSTGRRGKYL
LINFDHGTLIVHLGMSGHLRVLPPGIAPQKHDHFDLVVGKPVRNIMRMTDPRRFGAVLWH
DNADGDIEEHMLLRGLGLEPLEDKFSARELHRQTRNRSAPIKQVLLAGDIVVGVGNIYAS
ESLFKAGINPKTAAGRISLPRYEKLVVAIRETLAAAIEQGGSSLRDFIAVNGQSGYFQQS
YFVYNRTGLACRICTTPIRQIKQGQRSTFYCVVCQR
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattaccagaagtagaagtcacccggcgcggcgtcgctccccatctcgagggg
cagacggttgcgggagtggtgacgcgccacagcggattgcgctggccgtttccctccgac
ctgaacgaacggctggccggacacgtcatccgctcaaccgggcggcgcgggaaatacctg
ctgatcaatttcgaccacggcacgctgatcgtgcatcttggcatgtcggggcatctgcgt
gttctgccgccgggcatcgcgccgcaaaagcacgatcacttcgatctcgtggtgggcaag
ccggtcaggaacatcatgcgcatgaccgatccgcgccgtttcggcgccgtgctgtggcac
gacaacgccgacggcgacattgaagagcacatgctgctgcgcggtctcggcctggagccg
ctggaagacaaattctccgcgcgcgagctgcatcgccagacgcgcaaccgcagtgcgccg
atcaagcaagtgctgctggccggcgacatcgtcgtcggcgtcggcaacatctatgcgtcg
gaaagcctgttcaaggccggcatcaatcccaagaccgcggccggaagaatcagcctgccg
cgctatgaaaagctggtggtcgcgatccgcgaaacgctggccgccgccatcgagcagggc
ggcagcagcctgcgcgatttcattgccgtcaacgggcaatcgggatatttccagcagagc
tatttcgtctacaaccgtaccggcctggcttgccgtatctgcactacaccgatccgccag
atcaagcagggccagcgttccactttctactgcgtggtctgccagcgatga
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