Herbaspirillum hiltneri: F506_04955
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Entry
F506_04955 CDS
T04039
Name
(GenBank) RNA polymerase sigma factor FecI
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
hht
Herbaspirillum hiltneri
Pathway
hht02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
hht00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
F506_04955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hht03021
]
F506_04955
Transcription machinery [BR:
hht03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
F506_04955
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
PhyR_sigma-like
HTH_23
GerE
HTH_28
HTH_11
HTH_Mga
HTH_VMAP-M9
HTH_Tnp_ISL3
HTH_24
HTH_3
Motif
Other DBs
NCBI-ProteinID:
AKZ62104
UniProt:
A0ABM5UY42
LinkDB
All DBs
Position
complement(1098035..1098565)
Genome browser
AA seq
176 aa
AA seq
DB search
MSYSDPFTQPHMHTLYADHHGWLQTWLRRKLGCAFTAEDLTHDTFLRLLVRPRELDTKRD
PRAYLTTIAQGLVVDHWRRREIERAWLDAIMELAEPLVPSAEHQAVILETLVEVDRILAR
LPSKPREAFLLSHLHGLTYAEIAAQLGVSERMVKKYMAQAMLHCLTAGNAFRSAVA
NT seq
531 nt
NT seq
+upstream
nt +downstream
nt
atgtcctattcagatccattcacgcaaccgcacatgcacacgctctatgccgatcatcac
ggctggctgcagacgtggctgcgcaggaaactgggatgcgcctttacggcagaggatctc
actcacgataccttcctgcgcttgctggtgcggccgcgtgaactcgatacgaaacgcgat
ccgcgcgcttatctgacgaccatcgcgcaaggcctggtggtggatcactggcgccgccgc
gaaatcgagcgcgcctggctcgacgccatcatggagctggcggaacctctggtcccttcg
gcggaacatcaggccgtcatcctcgaaacgctggtggaagtggaccgcatcctcgcccgc
ctgccgagcaagccgagagaggccttcctgctgtcgcacctgcacgggctgacctatgcg
gagattgccgcgcaactgggcgtgtccgaacgcatggtcaagaaatacatggcgcaggcg
atgttgcattgcctgacggcgggcaatgcattccgttcggcggtggcatga
DBGET
integrated database retrieval system
