KEGG   Herbaspirillum hiltneri: F506_05160
Entry
F506_05160        CDS       T04039                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
hht  Herbaspirillum hiltneri
Pathway
hht02020  Two-component system
Brite
KEGG Orthology (KO) [BR:hht00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    F506_05160
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hht03021]
    F506_05160
Transcription machinery [BR:hht03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     F506_05160
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 HTH_23 Sigma70_ECF PhyR_sigma-like HTH_24
Other DBs
NCBI-ProteinID: AKZ62137
UniProt: A0ABN4HU18
LinkDB
Position
complement(1144297..1144803)
AA seq 168 aa
MAATDSSLLQVQTLYSHHGWLLGWLRRRTGNPELAADLAQDTFLRIMVSRRDFYLDEARA
LLATIARGLVIDHFRRCALEAAFLEMLAQLPPEHVPSPEARLAVLETLNQVDAMLAALPA
KVRSAFLLSQLDGLGYAEIAVRLDVSLSSVQQYMKRAFTACYRVQYGD
NT seq 507 nt   +upstreamnt  +downstreamnt
atggcggcaaccgattcgtcactgctgcaggtgcagacgctgtacagccatcacggctgg
ctgctgggctggctgcggcgccgcaccggcaatccggaactggcggccgacctggcccag
gacactttcctccggatcatggtgtcgcgccgcgacttttacctggacgaagcgcgcgcc
ttgctggcgaccatcgcccgcggcctggtgatcgatcatttccgccgctgcgcgctggaa
gccgccttcctcgagatgctggcgcaattgccgcccgaacacgtgccttctcccgaggcg
cggctggccgtgctggaaaccctcaaccaggtcgatgccatgctggccgcgctgccggcc
aaggtgcgcagcgccttcctgctgtcgcagctggatggcctgggctatgccgagatcgcc
gtccgtctggacgtgtccctgagttcggtgcagcaatacatgaagcgtgccttcaccgct
tgttatcgcgtgcagtatggcgactga

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