KEGG   Herbaspirillum hiltneri: F506_07100
Entry
F506_07100        CDS       T04039                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
hht  Herbaspirillum hiltneri
Pathway
hht03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hht00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    F506_07100 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hht03021]
    F506_07100 (rho)
   03019 Messenger RNA biogenesis [BR:hht03019]
    F506_07100 (rho)
Transcription machinery [BR:hht03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     F506_07100 (rho)
Messenger RNA biogenesis [BR:hht03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     F506_07100 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N AAA_25 OB_RNB Phostensin_N NACHT S1CSD-TOTE-2 FtsK_SpoIIIE AAA_22
Other DBs
NCBI-ProteinID: AKZ62474
UniProt: A0ABM5UZ59
LinkDB
Position
complement(1568616..1569884)
AA seq 422 aa
MHLSELKALHVSALLEMAIGLDIDNAARLRKQELMFAILKKRAKSGEQIFGDGALEVLPD
GFGFLRSPDASYMASTDDIYISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVN
GEAPEASKHRILFENLTPLHPNKIMQLEREMRGEENITGRIIDLIAPIGRGQRGLLVASP
KSGKSVMLQHIAHAITTNHPDTVMIVLLIDERPEEVTEMQRSVRGEVVASTFDEPATRHV
QVAEMVLEKAKRLVEMKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLTIIATALIETGSRMDDVIYEEFKGTGNMEVHLERRLAEKRVYPAINL
SKSGTRREELLIKPDQLQKIWVLRKLMYDMDEIEAMEFILDKMKSTKNNAEFFDMMRRGS
ER
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgcacttatcagaattaaaggcgttacacgtctccgcattgcttgaaatggcaattggc
ctggacatcgataacgcggcgcgcctgcgcaaacaagaactgatgttcgcgatcctcaag
aaacgcgcgaaatcgggagaacagattttcggcgacggcgcccttgaagtgttgcctgac
ggcttcggcttcctgcgctcgcctgacgccagctacatggcgtccactgacgacatttac
atttcgccctcgcaaatccgccgcttcaatctccacaccggcgactccatcgaaggcgaa
gtacgcacaccgaaagacggcgagcgctactttgcgctggtcaaggtcgacaaggtcaac
ggcgaagcgccggaagcctccaagcatcgcatcctgtttgaaaacctcacgccgctgcat
ccgaacaagatcatgcagctcgagcgcgaaatgcgcggcgaggaaaacatcaccggccgc
atcatcgacctgatcgcgccgatcggccgcggccagcgcggtctgctggtggcgtcgccg
aagtccggtaaatcggtcatgctgcagcacatcgcccacgccatcaccaccaaccatccc
gacaccgtgatgatcgtcctgctgatcgacgaacgtccggaagaagtgaccgaaatgcag
cgctcggtgcgcggcgaagtcgtcgcatcgaccttcgacgaaccggccacgcgtcacgtc
caggtcgccgaaatggtgctggaaaaagccaagcgcctggttgaaatgaagaaggacgtg
gtcatcctgctggactcgatcacccgtctggcgcgcgcctacaataccgtgatcccggcg
tccggcaaggtcctgaccggcggtgtggacgccaacgcgctgcaacgtccgaagcgtttc
ttcggcgctgcgcgcaacgtcgaagaaggcggctcgctgaccatcatcgcaacggccctg
atcgaaaccggcagccgcatggatgacgtgatctacgaagaatttaagggtaccggcaac
atggaagtccatctggaacgccgcctcgccgagaagcgcgtctatccggccatcaacctc
agcaagtccggcacgcgccgtgaagaactgctgatcaagccggaccagctgcaaaagatc
tgggtcttgcgcaagctgatgtacgacatggacgaaatcgaagcgatggaattcattctc
gacaagatgaagtcgaccaagaacaatgcagagttcttcgacatgatgcgccgcggcagc
gaacgctga

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