Herbaspirillum hiltneri: F506_07370
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Entry
F506_07370 CDS
T04039
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hht
Herbaspirillum hiltneri
Pathway
hht03030
DNA replication
hht03430
Mismatch repair
hht03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F506_07370 (dnaE)
03430 Mismatch repair
F506_07370 (dnaE)
03440 Homologous recombination
F506_07370 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hht03032
]
F506_07370 (dnaE)
03400 DNA repair and recombination proteins [BR:
hht03400
]
F506_07370 (dnaE)
Enzymes [BR:
hht01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
F506_07370 (dnaE)
DNA replication proteins [BR:
hht03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
F506_07370 (dnaE)
DNA repair and recombination proteins [BR:
hht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
F506_07370 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
AKZ62522
LinkDB
All DBs
Position
1640867..1644325
Genome browser
AA seq
1152 aa
AA seq
DB search
MTTPQFVHLRLHSEYSIVDGLVRIDDVVKAAAKDGQAALAITDLANLFGMVKFYKGARGK
GVKPIAGCDVWISNDDDRDKPSRLLLLVKDHHGYLQLCDLLSKAWLTNLHRGRAELRPEW
LEQLRHDEGGNGLIALSGAHFGDVGIAIENGNVAAAERAAQRWSEVFPGAFYVEIQRANQ
PNMEVQVRQSVALAARLGLPVVATHPIQFLSQDEFVAHEARTCIAEGEILANARRVRRFN
EQQNFKTQAEMAELFADLPGAVLNTIEIAKRCNLMLTLGKPQLPNFPTPDGMTIDDFLVA
ETKIGLEARLKHLYPDEARREKERPRYEARLKFENDTIIKMKFPGYFLIVADFIQWAKNN
GVPVGPGRGSGAGSLVAYALSITDLDPLEYNLLFERFLNPERVSMPDFDIDFCQEGRDRV
IQYVKDRYGKEAVSQIATFGTMAAKGAVRDVGRVLDLGYNFCDGISKLIPFKPGKLVTLA
DAIEEEPLLKERLENEEEVKQLMGLAQQVEGIARNIGMHAGGVLIAPGKLTDFCPLYTQG
GDAGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIKQLDPAMADFDLARLPLTDR
ASYDLLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDFCKRKH
GEKFDYPDPRTEGILSETYGIMVYQEQVMQMAQVVGGYSLGGADLLRRAMGKKKAEEMAE
HRNIFREGAAKDGLSQEKADEIFDLMEKFAGYGFNKSHAAAYALLSYHTAYLKAHHPAAF
MAANLSLAMDDTEKIKILVEDSLDVCGLSLLPPDINLSDYRFTPVGEPGKKAVHIRYGLG
AVKGSGQSAIEAIIAARQDGPFKDLFDFAKRVDKKQINRRTVDSLIRAGAFDCFGVDRAI
LQATVGLAWENAEQMEASANQVSLFGGDDSDLETPLEYVQVRAWSDKQRLTEEKTALGFY
LSGHLFDAYEKEVRQFVRTKISSLEPSRDPRSLAGIITGIRVQMTQRGKLLIVSLDDGSG
TVDVTVYGELAEPNKAFFKEDELLIVQGKVSEDRFNGGLRISAEKVMDIGAARIQYGQRV
VVSLNKGVDPAYLRDTLSSYRQPQGLPFVMKYVQSGVGCEVILGDSWRVVPSDGLQSSLK
ESFGQEAVVVEY
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgactacaccgcaattcgtacatcttcgactccattccgagtactccatcgtcgacggc
ctggtccgcatcgacgacgtcgtcaaggcggccgccaaagacgggcaggccgcgctggcg
atcaccgatctggccaacctgttcggcatggtcaagttctacaagggcgcgcgcggcaag
ggcgtcaagccgatcgccggttgcgacgtctggatcagcaacgacgacgaccgcgacaag
ccctcgcgcctgctgttgctggtcaaggatcatcacggctacctgcaactgtgcgacctg
ctgagcaaggcctggcttaccaacctgcatcgcggccgcgccgaactgcgccccgagtgg
ctggaacaattgcgtcatgatgaaggcggcaatggcctgatcgccttgtcgggcgcgcat
ttcggcgatgtcggcatcgccatcgagaatggcaacgtggcggcagccgagcgcgccgcc
cagcgctggagcgaggtttttccgggcgctttctacgtcgaaatccagcgcgccaaccaa
cccaacatggaagtccaggtgcgccagtcggtcgccctggcggcgcgcctcggcttgccg
gtggtggccacgcatccgatccagttcctgtcgcaggacgaattcgtcgcccacgaagcg
cgcacctgcatcgccgaaggcgagatcctggccaatgcgcgccgcgtgcgacgcttcaac
gagcagcagaatttcaagacccaggccgagatggcggagttgttcgccgacctgccgggc
gcggtgctgaacacgatagaaatcgccaagcgctgcaacctgatgctgacgctgggcaag
ccgcagttgccgaacttcccgacgccggacggcatgaccatcgacgatttcctggtggcc
gaaaccaagatcggcctggaagcgcgcctcaagcacctgtatcccgatgaagcccgccgc
gagaaagagcgcccccgttacgaggcgcgcctgaagttcgagaacgacaccatcatcaag
atgaaattccccggctacttcctgatcgtggccgactttattcaatgggccaagaacaat
ggcgtgccggtcggtccgggccggggttcaggcgcgggttcgctggtggcgtatgcgctg
tcgatcaccgatctggatccgctcgaatacaacttgctgttcgaacgcttcctcaatcct
gaacgggtatcgatgcctgacttcgacatcgacttttgccaggaaggccgcgaccgcgtt
atccagtacgtcaaggaccgttacggcaaggaggcggtctcgcagatcgccaccttcggc
accatggcggccaagggcgcggtgcgcgacgtcggccgcgtactcgacctgggctacaac
ttctgcgacggcatctccaagctgatccccttcaagccgggcaagctggtcacgctggcc
gacgccatcgaagaggagccgctgctgaaagagcggctggaaaacgaagaagaagtgaag
cagctgatgggcctggcccagcaggtcgaaggcatcgcccgcaacatcggcatgcacgcc
ggcggcgtgctgatcgcaccgggcaagctgaccgatttttgcccgctgtacacgcagggc
ggcgatgccggcgtggtgtcgcaatacgacaaggacgacgttgaagcggtcggcctggtg
aagttcgacttcttgggcctgaccacgctgacgatcctcgatcgcgcggtgcgctacatc
aagcagctcgatccggccatggccgatttcgatctggcccggttgccgctgaccgaccgc
gcttcgtacgacctgctgaccaaggccaagacggtcgccgtgttccagctggaaagccgc
ggcatgcaaggcatgctgaaagacgcgcggcccgaccgcttcgaggacattattgcgctg
gtggcgctgtatcgtccaggtccgatggacctgatccccgacttctgcaagcgcaagcac
ggcgaaaaattcgactatcccgatccgcgcaccgaaggcatcctgtccgagacctacggc
atcatggtctatcaggagcaggtcatgcagatggcgcaggtggtcggaggctactcgctg
ggtggcgccgacttgctgcgtcgcgcgatgggcaagaaaaaagccgaagagatggccgag
catcgcaacatcttccgcgaaggcgccgccaaggacggcctgtcgcaggagaaggccgac
gaaatcttcgacctgatggaaaaattcgccggctacggcttcaacaagtcgcacgccgct
gcctacgcgctgctgtcgtatcacaccgcctatctcaaggcacatcaccctgccgcgttc
atggccgccaacttgtcgctcgccatggacgataccgaaaagatcaagatcctggttgaa
gactcgctcgatgtctgcggcctgagcctgctgccgcccgacatcaacctgtccgactac
cgcttcaccccggtcggcgaaccgggcaagaaggccgtgcatatccgctacggcctgggt
gccgtcaaggggtcaggccagagcgcgatcgaggccatcatcgcggcgcgccaggatggt
ccgttcaaggacttgttcgacttcgccaagcgcgtcgacaagaagcagatcaaccgccgc
acggtcgattctctgatacgcgccggcgccttcgactgcttcggcgtcgaccgcgcaatc
ctgcaagccacggtcggcctggcctgggaaaatgcggaacaaatggaagcctcggccaac
caggtcagcctgttcggcggcgacgacagcgacctcgagacgccgctggaatacgtgcag
gtgcgcgcgtggagcgacaagcagcgccttacggaagaaaagaccgcgctcggtttctac
ctgtccggccatctgttcgacgcttacgaaaaagaggtgcgccagtttgtgcggaccaag
atttccagtctggagccgtcacgcgatccgcgttcgctggccggcatcatcaccggcatc
cgcgtgcagatgacccagcgcggcaagctgctgatcgtttcactcgacgacggcagcggc
acggtcgacgtcacggtctacggcgaactggccgaaccgaacaaggcctttttcaaggaa
gacgaattgctgatcgtgcagggcaaggtgtcggaagaccgcttcaacggcggcctgcgc
atctccgccgaaaaggtcatggacatcggcgcagcacgtatccagtacgggcagcgggtg
gtggtgtcgctcaacaagggcgtcgatccggcgtacctgcgcgacacactgtcatcctac
cgtcagccgcagggtttacccttcgtcatgaaatatgtacagtccggagtcggctgcgaa
gtgattctcggagattcctggcgcgtggttcccagcgacggcttgcagtcgtcattgaag
gaatcgttcggacaggaagccgtggttgttgaatattaa
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