Herbaspirillum hiltneri: F506_10580
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Entry
F506_10580 CDS
T04039
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hht
Herbaspirillum hiltneri
Pathway
hht03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hht00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F506_10580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hht03400
]
F506_10580
Enzymes [BR:
hht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F506_10580
DNA repair and recombination proteins [BR:
hht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F506_10580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
AAA_30
AAA_25
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AKZ63055
LinkDB
All DBs
Position
2322043..2325498
Genome browser
AA seq
1151 aa
AA seq
DB search
MSFDLKKSLPKPGARFVPPAPHGSADAYLLAQAAIALKADKRMLTVVVANATDAQRLLAE
IPWFQRRVEGGEGESALRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQNGQCDVLIV
PATTALLRMAPPGFLAAYTFFFKQGEKLDEARLKSQLTLAGYTHVTQVMSPGEYSVRGGL
IDIFPMGSALPYRLDLFGDTIETIRTFDADTQRSLYPVREVRLLPGREFPMDEASRTSFR
SRWREVFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFEETATLFRYLPEDGMFATVGDID
QAIKRFWSDTRSRHNFLKADRERPVLAPEQVFLTDEDFFTLVKPYGRWVLQTDDAPSALS
AAIPNVAVNRRIDDPLTNLRGYLLKTGKRVMLCAESNGRRETLQQYFAEYDLHPALCDGY
DSFLGNTEPLMLGVAPLHAGFELEQEQVAFITETELYAGSGRRVGRKKQENVTQVEHMVR
DLSELKIGDPVVHANHGIGRYMGLLSMDLGEGETEFLHLEYAKETKLYVPVSQLHVIARY
SGASPEDAPLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRALRQGHAFQYSARDYET
FAESFGFEETPDQAAAINAVIGDMTSGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQV
AILAPTTLLAEQHAQTFADRFANWPVRIAELSRFRTGKEVTQAIKGMADGTLDIIIGTHK
LLSDDVKFSRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRD
FSIIATAPQKRLAIKTFVRAEGESTIREACLRELKRGGQVYFLHNEVDTIENRKAMLEAL
LPEARVVIAHGQMHERDLEKVMRDFVAQRSNILLCTTIIETGIDVPTANTIIMHRADKFG
LAQLHQLRGRVGRSHHQAYAYLLVNDVKGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEI
RGAGEVLGDSQSGEMHEIGFQMYSDMLSEAVRALKDGREPDLAAPLASTTEINLHVPALL
PNDYCGDVHERLSLYKRFANCTSQDTIDALQEELIDRFGKLPEVAKALVETHRLRIAAKP
LGIIKIDAHAESALLQFVPNPPVDAMRIIELIQKNRHIKLNGQDKLRITANMPDLNARVM
QIKATMRSLVG
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgacctgaaaaaatcccttcccaagcctggtgcgcgcttcgttcctccggcg
ccgcatggctccgccgacgcctatttgctggcgcaagccgcgattgccctgaaagccgac
aagcgcatgctgaccgtggtcgtggccaacgccaccgacgcccagcgcctgctggcggaa
atcccgtggttccagcgccgggtcgaaggcggcgaaggtgaaagtgcgctgcgctgccac
ctgctgcccgattgggaaacgctgccttacgacgccttctcgccgcaccaggatcttgtc
tcggaacgcctggccaccttgtatgaagtgcagaacggccagtgcgacgtgctgatcgtg
ccggcgaccaccgccttgctgcgcatggccccgccgggtttcctcgcggcttacactttc
ttcttcaagcagggcgagaaactcgatgaggcgcgcctgaagtcgcagctgacgctggcc
ggctacacccacgtcacgcaagtcatgtcgcccggcgagtattcagtgcgcggcggcctg
atcgacattttcccgatgggctcggcgctgccgtatcgccttgacctgttcggcgacacc
atcgaaaccatccgcaccttcgacgccgatacccagcgctcgctttatccggtgcgcgaa
gtgcggttgctgccgggccgggaattcccgatggatgaagcttcgcgcacctccttccgc
agccgctggcgcgaagtgttcgaaggcgatccctcacggtcggcgatctacaaggacatc
ggcaacggcatcgcctcggccggcatcgaatattacttgccgctgttttttgaagagact
gccacgctgttccgctacctgccggaggacggcatgttcgccacggtcggcgatatcgac
caggccatcaagcgcttctggagcgacacgcggtcgcgccacaatttcctcaaggccgac
cgcgaacgtcccgtgctggcgccggaacaggtgttcctcaccgacgaagatttcttcacg
ctggtcaagccctacggccgctgggtattgcaaaccgacgacgcgccatccgccttgtcg
gcagcgattcccaatgtcgccgtgaaccgccgtatcgacgatccgctgaccaacctgcgc
ggctacctgctcaagaccggcaagcgcgtcatgctgtgcgccgagtccaacggccgccgc
gagacattgcagcaatactttgccgaatacgacctgcatcccgcgctgtgcgacggctac
gacagcttcctcggtaacaccgaaccgctgatgctgggcgttgcgccgctgcatgccggc
ttcgagctggagcaggagcaggtcgccttcattaccgagaccgagctgtacgccggttcc
gggcgccgcgtcggccgcaagaaacaggaaaacgtcacccaagtcgagcacatggtgcgc
gatctgtccgagctcaagatcggcgatccggtggtgcatgccaaccatggcatcggccgt
tacatgggtttgctcagcatggatctgggcgagggcgagacagaattcctgcatctggaa
tacgcgaaggaaaccaagctctacgtgccggtctcacaactgcatgtgatcgcgcgctat
tcgggcgcctctccggaagatgcaccgctgcattcgctcggttccggccagtgggaaaaa
gccaagcgcaaggccgcgcagcaaatccgcgataccgccgccgaactgctcaatctgtat
gcgcgccgggcgctgcgccaaggccacgccttccagtactccgcccgcgactacgagacc
ttcgccgagagtttcggctttgaagaaacgcccgaccaggccgccgccatcaatgccgtc
atcggcgacatgaccagcggcaagccgatggatcgactgatctgcggcgacgtcggtttc
ggcaagaccgaagtggccctgcgcgccgccttcgtcgccgtcatgggcggcaagcaggtc
gccatcctggcgccgaccactttgctcgccgagcagcatgcgcagaccttcgctgaccgc
ttcgccaactggccggtgcgcatcgccgagctgtcgcgtttccgcaccggcaaggaagtc
acgcaagccatcaagggtatggcggacggtacgctcgacatcatcatcggcacccacaaa
ttgctgtccgacgacgtcaagttctcgcgcctggggctggtcatcatcgacgaagaacat
cgcttcggcgtgcgccagaaggaagcgctcaagtcgctgcgtgccgaggtcgacgtgctc
acgctgaccgccacgccgatcccgcgcacgctgggcatggcgctggaaggcttgcgcgat
ttctcgatcatcgccaccgcgccgcaaaagcgcctggcgatcaagacctttgtgcgcgcc
gaaggcgagtccaccatccgcgaagcctgtctgcgcgagctcaagcgcggcggccaggtc
tacttcctgcacaatgaagtcgataccatcgagaaccgcaaggccatgctcgaagcgctg
ttaccggaagcgcgcgtggtcatcgcacacggccagatgcatgagcgcgacctggaaaag
gtcatgcgcgatttcgtcgcgcagcgttccaacatcctgctgtgcacgaccatcatcgag
accggtatcgacgtgccgactgccaacaccatcatcatgcatcgcgccgacaagttcggc
ctggcgcagttgcatcagttgcgcggccgcgtcggccgttcgcatcaccaggcctacgcc
tatttgctggtcaatgacgtcaagggcctgaccaaacaggcgcagcgccgcctggaggcg
atccagcagatggaggaactcggcagcggcttctaccttgccatgcacgacctcgaaatc
cgcggcgccggcgaagtgctcggcgacagccagtccggcgagatgcacgagatcggtttt
cagatgtattccgacatgctcagcgaagcggtacgcgcgctcaaggacggccgcgagccg
gacctggcggcgccgctggccagcaccacggagatcaatctgcacgtgccggctttgctg
cccaacgactattgcggcgacgtgcacgaacgcttgtcgctgtacaagcgcttcgccaac
tgcacctcgcaagacaccatcgatgccttgcaggaggagttgatcgaccgcttcggcaag
ttgccggaagtcgccaaggcgctggtcgaaacgcatcgcctgcgcattgccgccaagccg
ctcggcatcatcaagatcgacgcgcacgccgaatcggcgttgctgcaattcgtgccgaat
ccaccggtcgacgccatgcgcatcattgaactgatccagaagaatcgccacatcaaactg
aacggccaggacaagttgcgcatcaccgccaacatgcccgacctcaacgcgcgcgtgatg
caaatcaaggcgaccatgcgctcgctggtcggctga
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integrated database retrieval system
