Herbaspirillum hiltneri: F506_14050
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Entry
F506_14050 CDS
T04039
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hht
Herbaspirillum hiltneri
Pathway
hht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F506_14050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hht03019
]
F506_14050
Enzymes [BR:
hht01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F506_14050
Messenger RNA biogenesis [BR:
hht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F506_14050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKZ63641
LinkDB
All DBs
Position
3095780..3097183
Genome browser
AA seq
467 aa
AA seq
DB search
MSFSSLGLSEEIVRAVTEQGYTTPTPIQMQAVPAVLGGGDLLAGAQTGTGKTAGFTLPLL
QRLSSVERVKVNGHVPIRALILTPTRELAAQVEESVRVYGKYLPLTSACIFGGVGINPQI
RLLKQGVDILVATPGRLLDHMQQNTVDLRNVQVLILDEADRMLDMGFIRDIKKILAVLPK
KRQNLLFSATFSDEIKALADGLLNSPAMIEVARRNSTVEVIGQKIHPVDRDKKHPLLAHL
IKTNQWNQVLVFTRTKHGANKLVEQLARDEITAMAIHGNKSQAARTRALADFKDGKLQAL
IATDIAARGIDIDQLPHVVNYDLPNVSEDYVHRIGRTGRAGATGSAVSLVCVDERDLLHD
IERFIKREIPVEIVPGFEPDPKAKPQPIQLRSEGHRGGGGGGRRPQGGGGGGNRSQQPKT
GGQGQGQAQAAKPRQGGPAKPQGAGPAQSRGPAARPASTHRSGGRGR
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgtcattctcatctctcggtctttccgaggaaatcgttcgtgccgtaaccgaacaaggc
tataccacgcccacaccaattcagatgcaagccgtgcctgccgtactcggtggcggcgac
ctgctggccggcgcacaaaccggcaccggcaagaccgccggcttcacgctgccgctgctg
cagcgcctgtcttccgtcgagcgcgtcaaggtcaacggccacgtgccgatccgcgcgctg
atcctgaccccgacgcgtgaactcgcggcgcaggtcgaagaaagcgtacgcgtctatggc
aaatacctgccgctgacttcggcctgcatcttcggcggcgtcggcatcaatccgcaaatc
cgcctgctcaagcaaggcgtcgatatccttgtcgccacgcccggccgcctgctcgaccac
atgcagcaaaacacggtcgacctgcgcaacgtgcaagtcctgatcctggacgaagccgat
cgcatgctggacatgggtttcatccgcgacatcaaaaagatcctcgcggtcctgccgaag
aagcgccagaacctgctgttctccgccaccttctccgacgaaatcaaggcgctggccgat
ggcctgctgaattcgccggcaatgatcgaagtggcgcgtcgcaattccaccgtggaagtg
atcggccagaagatccacccggtcgaccgcgacaagaaacatccgctgctggcgcatctg
atcaagaccaaccagtggaaccaggtgctggtcttcacccgcaccaagcacggcgccaac
aagttggtcgaacagctggcgcgcgacgagatcaccgccatggcgatccacggcaacaag
agccaggcagcgcgcacccgcgccctggccgacttcaaggacggcaagctgcaagcgctg
atcgctaccgatatcgctgcacgcggcatcgacatcgaccagctgccgcacgtggtcaac
tatgatctgccgaacgtctccgaagattacgtccaccgcatcggccgcaccggccgcgcc
ggcgctaccggttccgccgtatcgctggtctgcgtcgatgaacgtgatctgctgcacgac
atcgagcgtttcatcaagcgcgagatcccggttgaaatcgtgcccggcttcgaacccgat
ccgaaggccaaaccgcaaccgatccagctgcgcagcgaaggtcatcgcggcggtggcggc
ggcgggcgtcgtccacaaggtggcggtggcggcggcaatcgttcccagcagccgaagacc
ggcggtcagggccaaggccaggcgcaagccgccaagccgcgtcaaggcggtcctgccaag
ccgcaaggcgcaggtccggcgcagagccgcggtcctgctgcgcgtcctgcatcgacccac
cgctccggcggtcgcggcaggtaa
DBGET
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