Herbaspirillum hiltneri: F506_16740
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Entry
F506_16740 CDS
T04039
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hht
Herbaspirillum hiltneri
Pathway
hht03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hht00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F506_16740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hht03019
]
F506_16740
03016 Transfer RNA biogenesis [BR:
hht03016
]
F506_16740
Enzymes [BR:
hht01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
F506_16740
Messenger RNA biogenesis [BR:
hht03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
F506_16740
Transfer RNA biogenesis [BR:
hht03016
]
Prokaryotic type
tRNA degradation factors
F506_16740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
KH_KhpA-B
DUF5813
KH-I_KHDC4-BBP
DUF4164
Motif
Other DBs
NCBI-ProteinID:
AKZ64096
LinkDB
All DBs
Position
complement(3663437..3665569)
Genome browser
AA seq
710 aa
AA seq
DB search
MFNKVTKTFQYGQHQVTLETGEIARQASGAVVVSIEDTVVLATVVARKDAKPGQDFFPLT
VDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPIRPLFPEGYLNEVQVIIHVLSV
NPEIDPDIAAMIGASAALSIAGIPFNGPVGAARVGYIDGQYILNPTATQLKTSQLDLVVA
GTETAVLMVESEAKQLSEEIMLGAVVFGHDQSKAVINAIHELVRDGGKPEVEWTAPAKNE
PLIARVTELANDKLREAYQTKDKQARTAKLKTVTSDVNAALAADAAAAGTPAADAAEVGG
ILFDLEAKIVRSQILDGEPRIDGRDTRTVRPISIRTGVLPRTHGSALFTRGETQALVIAT
LGTARDEQKIDALMGEYTDRFMLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALIAAL
PAADEFSYSVRLVSEITESNGSSSMASVCGGCLALMDAGVPMQAHVAGIAMGLIKEGSKF
AVLTDILGDEDHLGDMDFKVAGTANGITALQMDIKIQGITKEIMQVALEQAKEGRVHILG
KMQEAVPAGAGELSDFAPRLITIKINPEKIRDVIGKGGAVIRALTEETGTQIDISDEGVV
TIASVDAGAGQEAKRRIEELTASVEVGKVYEGTVLKLLDFGAIVQVLPGKDGLLHISQIA
NERVNAVADYLKEGQQVRVKVLETDDRGRLKLSMKAAQEGTEAPASQDAQ
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
gtgttcaataaagttactaaaaccttccagtatggacaacaccaggtcacgctggaaacc
ggcgaaatcgctcgccaggcttccggtgcagtcgtcgtttcgattgaagacactgttgtg
ctggcaacggtcgtggcccgcaaggatgccaagccaggtcaggactttttcccattaacc
gtcgattacatcgagaagacttacgctgcgggtcgcatccccggcggcttcttcaaacgt
gaaggcaagccttccgaaaaggaaacactgacatcgcgcctgatcgatcgcccgattcgt
ccgctgttccctgaaggttacctgaacgaagtgcaggtcatcatccacgttctgtccgtg
aatcctgaaatcgatccggacatcgctgcgatgatcggtgcgtcggcagcgctgtcgatc
gccggtattccgttcaacggcccggtcggcgccgcacgcgtcggttacatcgacggccag
tacatcctgaacccgacagcaacgcaactgaagacgtcgcaactggatctggttgtcgcc
ggcaccgaaaccgccgtgctgatggtcgaatccgaagccaagcaattgtccgaagaaatc
atgctgggcgcagtcgtgttcggtcacgatcaatcgaaggcagtcatcaacgcgatccac
gaactggtgcgcgacggcggcaagcctgaagtcgaatggacggctcctgccaagaacgaa
ccgctgatcgcccgcgtcaccgaactggccaacgacaagctgcgtgaagcctaccagacc
aaggacaagcaagcgcgcaccgccaagctcaagaccgtcacttccgacgtcaatgcagcg
ctggcagccgatgctgccgctgccggcaccccggcggcagatgcggccgaagtcggcggc
atcctgtttgacctggaagccaagatcgtccgctcgcaaatcctcgacggcgaaccacgc
atcgacggccgcgatactcgcaccgtgcgtccgatctcgatccgcaccggcgtgctgcca
cgcacccacggttcggcattgttcacccgcggtgaaactcaggcgctggtcatcgcgacc
ctgggtactgcacgcgacgaacaaaagatcgacgcgctgatgggcgagtacaccgaccgc
ttcatgcttcactacaacatgcctccgttcgcgaccggcgaaaccggccgcgttggtacg
ccaaagcgccgcgaaatcggacacggccgtctggccaagcgcgcgctgatcgccgccttg
ccggcagctgacgagttcagctactcggtgcgtctggtgtcggaaatcactgaatccaac
ggttcctcgtcgatggcttcggtctgcggcggctgcctggcattgatggacgccggcgtg
ccgatgcaggcacacgtggccggtatcgccatgggcctgatcaaggaaggcagcaagttc
gccgtcctgaccgatatcctgggcgacgaagatcacctcggcgacatggacttcaaggtg
gcgggtactgccaacggcatcaccgcactgcaaatggacatcaaaatccagggcatcacc
aaggaaatcatgcaggtcgcgctggaacaagccaaggaaggccgcgtgcacatcctcggc
aagatgcaggaagccgttccggccggcgcaggcgaactgtccgacttcgctccacgcctg
atcaccatcaagatcaatccggaaaaaatccgtgacgtgatcggcaagggcggcgcagtc
attcgcgcgctgaccgaagaaaccggcacacagatcgacatcagcgacgaaggcgtggtc
accatcgcttccgttgacgctggtgcaggccaggaagccaagcgccgcatcgaagaactg
accgcttccgtcgaagtcggcaaggtctacgaaggcaccgtcctgaagctgctggacttc
ggtgcgatcgttcaggtcctgccaggcaaagatggtttgctgcacatcagccagatcgct
aacgagcgcgtcaacgccgttgccgattacctgaaggaaggccagcaagtccgcgtcaag
gttctggaaaccgacgaccgcggccgtctgaaactgtcgatgaaggccgcgcaagaaggc
acggaagcgcctgcttcgcaagacgcgcagtaa
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