Herbaspirillum hiltneri: F506_21705
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Entry
F506_21705 CDS
T04039
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hht
Herbaspirillum hiltneri
Pathway
hht03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hht00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
F506_21705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hht03021
]
F506_21705
03400 DNA repair and recombination proteins [BR:
hht03400
]
F506_21705
Enzymes [BR:
hht01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
F506_21705
Transcription machinery [BR:
hht03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
F506_21705
DNA repair and recombination proteins [BR:
hht03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
F506_21705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AKZ64923
UniProt:
A0ABM5V5Q2
LinkDB
All DBs
Position
complement(4794150..4798388)
Genome browser
AA seq
1412 aa
AA seq
DB search
MKALLDLFKQVQQNEQFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMTPLKKCQIMSEDDYAAKYEEYGDDFTAFM
GAEGIRELLRSIDIDRDAETLRVELKESKSEAKIKKYAKRLKVLEAFQRSGIKPDWMIME
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPEIITRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLAEMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKAAKKLVEIQEPVVWDILEDVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEA
RTLMLASNNILFPSNGEPSIVPSQDIVLGLYYATREAINAKNEGMLFQDVSEVIRAYDNK
EVELATRVTVRIVENPKDPVTGEFVRTVKRYETTVGRAILSEILPKGLPFSVLNRALKKK
EISKLINTSFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKATIIATAES
EVKQIEQQYSSGLVTAGERYNKVVDIWGKAGDDVGKAMMDQLKVEDVVRRDGTKGTQESF
NAIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVIEDDCGTSNGASMKAMVEGGEVIEALRDRI
LGRVAATDIINPETQATLYEAGTLMDEDTVEEVERLGIDEVKVRTPLTCDTRYGLCAKCY
GRDLGRGVLVNSGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGTIR
FTATMRYVTNGKGELIVISRSGEVLITDDLGRERERHKVPYGATLIVKDGMVIKAGTALA
TWDPLTRPIITEYTGTVKFENVEEGSTVAKQIDEVTGLSTLVVIDAKRRGSSAAKVLRPQ
VKLLNEQGEEVKIAGTEHAVTIGFQVGALITVKDGQQVHVGEVLARIPTESQKTRDITGG
LPRVAELFEARSPKDAGMLAEVTGTVAFGKETKGKQRLEITDMDGAKHEFLITKDKQVLV
HDGQVVNKGEMIVDGPADPQDILRLLGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVR
QMLRRVQVVDPGDTNYITGEQVERSELLDENDRVNAETKIPATYENVLLGITKASLSTDS
FISAASFQETTRVLTEAAIMGKKDGLRGLKENVIVGRLIPAGTGLAFHRARKEKDAWEAD
ERAALLESERQARVTETEAHSAETFGGADGEA
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcactgctcgatctattcaagcaagttcagcaaaacgaacaattcgacgcgatc
aaaattggtctggcgtcccccgaaaaaatccgttcgtggtcctacggcgaagtcaaaaag
ccggaaaccattaactaccgtactttcaagcctgagcgcgacggtctgttctgcgccaag
atctttggcccgatcaaagactacgaatgcctctgcggcaagtacaagcgcctcaagcac
cgcggcgtcatctgcgaaaaatgcggcgtcgaagtcacgctggccaaggtgcgccgtgag
cgcatgggccacatcgaactggcttcgccgactgcgcacatctggttcctgaaatcgctg
ccgtcgcgtctgggcatggtcctcgacatgaccctgcgcgatatcgaacgcgtgctgtac
ttcgaagcctacgtcgtgaccgatccgggcatgacgccgctgaagaagtgccagatcatg
tcggaagacgactacgccgccaagtacgaagagtacggcgacgacttcaccgcattcatg
ggcgccgaaggcatccgtgaactgctgcgctcgatcgacatcgaccgcgatgcagaaacc
ctgcgcgtggaactgaaggaatcgaagtccgaagccaagatcaagaaatacgccaagcgc
ctgaaggtgctggaagcgttccagcgttcgggcatcaagcccgactggatgatcatggaa
gtgctgccggtgctgccgccggaactgcgtccgctggtgccgctggacggcggccgcttt
gcgacctccgatctgaacgatctgtatcgccgcgtcatcaaccgtaacaaccgtctgaag
cgcctgatggaattgcgcgctccggaaatcatcacgcgcaacgaaaagcgcatgctgcaa
gaagcggttgactcgctgctggataacggccgtcgcggcaaggcgatgaccggcgccaac
aagcgtccgttgaagtcgctggccgaaatgatcaagggcaagggcggtcgtttccgtcag
aacttgctgggtaagcgcgtcgactactccggccgttccgtcatcgtggtgggtccgcag
ctcaagttgcaccaatgcggtctgccgaagctgatggccctcgagctgtttaaaccattt
atcttcaacaagctcgaactgatggggctggcaacgaccatcaaggcagccaagaaactg
gtcgaaatccaggaaccggtggtctgggacatcctggaagacgtgatccgcgaacatccg
gtcatgctgaaccgcgcgccgacattgcaccgtctgggtatccaggcgttcgagccggtc
ctgatcgaaggcaaggcgatccagctgcatccgctggtttgcgccgcgttcaacgccgac
ttcgacggcgaccagatggcggtccacgttccactgtcgatcgaagcgcagatggaagcg
cgcacgctgatgctggcgtcgaacaacatcctgttcccatcgaacggtgaaccgtcgatc
gtgccgtcccaggatatcgtgctgggtctgtactacgcaacgcgtgaggcgatcaacgcc
aagaacgaaggcatgctgttccaggacgtctcggaagtcatccgtgcgtacgacaacaag
gaagtcgaactggctacccgcgtcaccgtacgtatcgttgaaaatccaaaggacccggtc
accggcgaattcgtgcgtaccgtcaagcgttacgaaacgactgtcggccgcgccatcctg
tcggaaattctgccgaagggtctgccattctcggtgctgaaccgtgcactgaagaagaag
gaaatttcgaagctgatcaacacgtcattccgcaagtgcggtctgcgcgcgacggtcgtg
ttcgccgatcaactgatgcagtcgggcttccgtctggcgacacgcgccggtatctcgatc
tgcgtggacgacatgctggtgccgccgcaaaaggcgaccatcattgcgaccgccgaaagc
gaagtcaagcagatcgaacagcaatactcgtccggtctggttaccgccggcgaacgctac
aacaaggttgtggacatctggggcaaggccggcgacgacgtcggcaaggccatgatggac
cagctaaaggtcgaagatgtggtccgccgcgacggcaccaagggtacgcaagagtcgttc
aacgcgatttacatgatggccgactccggcgcccgcggttccgcagcgcagattcgtcag
ctggcaggtatgcgcggtctgatggctaaaccggacggttcgattatcgaaacgccgatt
accgcgaacttccgcgaaggcctgaacgtgttgcagtacttcatctcgacgcacggcgcc
cgtaagggtctggccgataccgcgctgaagaccgcgaactccggttacctgacacgccgt
ctggtcgacgtgacccaggatctggtcgtgatcgaagatgattgcggcacttccaacggc
gcctcgatgaaggcaatggttgaaggcggtgaagtcattgaagcgctgcgcgaccgtatc
ctcggccgcgttgccgccaccgacatcatcaatccggaaacccaggctacgctgtatgaa
gccggtaccctgatggacgaagacaccgttgaagaagtcgaacgcctcggcatcgacgaa
gtcaaggttcgcactccgctgacttgcgacacgcgctacggtctgtgcgccaagtgctac
ggccgcgatctgggtcgcggcgtgctggtcaacagcggcgaagcagtcggcgttatcgct
gcgcagtcgatcggcgaaccaggtactcagctgaccatgcgtacgttccacatcggtggt
gcggcgtcgcgtgcagcagtggcctcgtcggtggaagccaagtcgaacggcaccatccgc
ttcacggcgaccatgcgttacgtcaccaacggcaagggcgagctgatcgtcatttcccgt
tcgggcgaagtgctgatcaccgacgacctcggtcgtgagcgtgagcgtcataaagtgccg
tacggtgcgaccctgatcgtcaaggacggcatggtcatcaaggccggtactgcattggcg
acatgggatccgctgacacgtccgatcatcaccgagtacaccggtaccgtgaagttcgaa
aatgtcgaagaaggttcgaccgtcgccaagcagattgacgaagtgaccggtctgtcgacg
ctggtggttatcgatgccaagcgccgcggttcgtccgctgccaaggtgttgcgtccacag
gtcaagctgttgaacgagcaaggcgaagaagtcaagatcgccggcaccgaacatgcagtg
acgatcggcttccaggtgggcgcgctgattacagtgaaggacggtcagcaagttcacgtt
ggtgaagtgctggcgcgtatcccgaccgaatcgcaaaagacccgtgacattaccggtggt
ctgccgcgcgttgccgaactgttcgaagcacgttcgccgaaggatgccggcatgctggcg
gaagtcaccggtactgtggcgttcggtaaggaaaccaagggcaagcaacgtctggaaatc
accgacatggacggcgccaagcacgagttcctgatcaccaaggacaagcaagtgctggtg
catgacggccaagtggtgaacaagggcgaaatgattgtcgacggtcctgccgatccgcaa
gacatcctgcgcctgctgggtatcgaagcgctggcgcgttacatcgtcgacgaagttcag
gacgtgtaccgcttgcaaggcgtgaagatcaacgacaagcacatcgaagtcatcgtgcgt
cagatgctgcgtcgcgtgcaggttgtggatccgggcgataccaactacatcaccggcgaa
caggtcgaacgttccgaactgctggacgaaaacgatcgcgtcaatgcagagaccaagatc
cctgcgacgtacgaaaacgtcttgctgggtatcaccaaggcatcgctgtcgaccgactcg
ttcatctcggctgcatcgttccaggagactacccgtgtcctgaccgaagctgcgatcatg
ggcaagaaggacggcctgcgcggtctgaaggaaaacgtcatcgttggtcgtctgatcccg
gctggtaccggtctggcgttccaccgtgcacgcaaggaaaaagacgcatgggaagccgac
gagcgcgcagcgctgttggaatccgagcgtcaggcgcgtgtgaccgaaaccgaagcgcac
tctgccgagactttcggcggtgcggacggcgaagcgtaa
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integrated database retrieval system
