Halomonas huangheensis: AR456_11735
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Entry
AR456_11735 CDS
T04119
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hhu
Halomonas huangheensis
Pathway
hhu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hhu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AR456_11735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhu03400
]
AR456_11735
Enzymes [BR:
hhu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AR456_11735
DNA repair and recombination proteins [BR:
hhu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AR456_11735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALM52879
UniProt:
W1NCE2
LinkDB
All DBs
Position
2685919..2689368
Genome browser
AA seq
1149 aa
AA seq
DB search
MTTFSPLDPPRPRGTRDTLFWLEPPGAATALALSRLATDAPLLVITADTTEAVRLENELQ
FLAEVAVLPFPDWETLPYDSFSPHQDIVSARLRTLRHLQDGVHGIVLVPINTLMQRLSPV
DYIAGRVLTLETGEKLDREAFREKLSRAGYRAVETVYEPGEYALRGALIDLFPMGSDAPL
RIDLFDDEIDSLRVFDPDNQRSAGKIERIDLLPAHEYSLSRSAIACFREGFETLFDVDPR
QCPLYVDALKGIPSPGLEQYLPLFFEETASLFDHLAEGTRVAMLPGVRDAATHHWQAISS
RYENLGVDPTRPLLPPHRAFIPEAELFGLIKHHPRIELVRDHDHPHAIAPLAAPAPQVAI
NARAHQPLAALDKWLQQHGEQRVLFVAESRGRREALEETLSPVAANLPVVASFTEFLDSD
APRAIAEGELASGAELTDAGITLITETELIGEVVRQTRRQGKATDDNEMAIRHLSELKPG
APVVHQAHGVGRYRGLETLEAGGQAAEFVCLEYAEGARLYVPVDSLQLISRYAGADDELA
PLHRLGSEQWDKARRKAAEKIRDTAAELLDIYARREAREGYACQAPDDEYARFVANFPFE
ETADQRVAIQAVIADMTAPRPMDRVVCGDVGFGKTEVAMRAAFLAVQSERQVVVLVPTTL
LARQHYENFRDRFADTAVNIELISRFTSGSGQNETLERIRDGKSDIIIGTHKLLSRQLSF
PRLGLAIIDEEHRFGVAQKERLKGMRSEVDVLTLTATPIPRTLNMAMSGIRDLSIIATPP
ARRLSVKTFVQQREEAVIKEAILREILRGGQVYYLHNEVKTIEAAAEKLRELVPEARVGV
AHGQLPERSLERVMSDFYHKRFNVLVCSTIIETGIDVPTANTIIIERADKFGLAQLHQLR
GRVGRSHHQAYAYLLAPPPRAMTRDALKRLEAIGQAEDLGAGFTLASHDMEIRGAGELLG
DEQSGQMEAIGYSLYMQMLDRAVKAIREGRTPNIEAPLEQGVEVSLNLPALIPDDYLHDV
QQRLVMYKRIANTQNDGELKELRVEMIDRFGLLPGPVKTLLRQTRLRHRAERLGVARLEA
GAERGRIIFGRHTAVDPLVLVEMIQHAPQTYRLEGADTLRFQSSMDNEEARFQAVEQLLD
TLNRKTEAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgacaaccttttcgccgcttgatccgccgcgtccgcgtggcaccagagacactctgttc
tggctggagccaccgggcgccgccacggcattggctctgtcgcgcctcgccactgatgcg
ccactactggtgatcactgccgataccactgaggctgtgcgactggagaacgagttgcag
tttctcgccgaggtggcggtattgccgttccctgactgggaaaccctgccgtacgatagc
ttctcgccgcaccaggacatcgtttccgctcgactacgtaccctgcgccatctgcaggac
ggcgtgcatggcattgtactggtgcccatcaacaccctgatgcagcgcctgtcgccagtg
gactatatcgctgggcgagtattgacgctggaaaccggcgaaaagctggatcgcgaagcc
tttcgagagaagctctcccgcgcgggttatcgtgccgtggagaccgtctacgagcccggc
gaatacgctctgcgtggcgcactgatcgacctctttcccatgggtagcgatgcgccgctg
cgtatcgacctgttcgacgatgagatcgactccttgagggtgttcgatccagacaatcag
cgtagtgccggcaagatcgagcgtatagatctacttcctgcgcacgaatattcactgtca
cgctcggcgattgcctgcttccgcgaaggcttcgagaccctgttcgatgtcgacccgcgc
caatgcccactatacgtcgacgccctcaagggcatcccctcccccgggctcgagcaatat
ctgccactgttcttcgaggaaaccgcgtcgttgttcgaccacctcgccgaaggcactcgc
gtggccatgttgccgggtgtacgcgacgcagccacgcaccattggcaagccatcagcagc
cggtatgaaaatctgggggtagacccgacccggccattactgccaccccatcgcgccttt
attcccgaggcggagctgttcgggctgatcaagcatcaccctcggatcgaactggttcgc
gaccatgaccaccctcatgccatcgctccgctggcggctcctgcgccgcaagtggccatc
aatgctcgagcccatcaaccgctggcagcgctcgacaaatggctccagcaacatggcgaa
caacgggtgttgtttgttgccgaatcacgcggacgtcgcgaagcgttggaagagacgctg
tctccggtcgctgcaaacctaccggtcgttgcatcgttcacggagtttctcgatagtgac
gcaccacgcgccatcgccgagggcgaactggcttcgggggcagaactgaccgacgcaggc
atcactctgatcaccgaaacagagctgatcggtgaagtggtgcgacagactcggcgtcag
ggcaaggccaccgacgacaacgagatggccatccgtcacctgtcggagctcaaaccgggc
gcgcctgtggtccaccaggcacacggtgtcgggcgctatcgcggcctggaaaccctcgaa
gccggtggccaggccgctgagttcgtgtgcctggaatacgcagaaggcgccaggctctac
gtgccagtggatagcctgcaactgatctcacgatatgccggcgccgatgatgagcttgca
ccactacaccgtctaggctctgaacagtgggacaaggcacgccgcaaggcggcagagaag
attcgcgataccgccgccgaactgctggacatctatgcccgacgcgaggctcgcgaaggc
tacgcctgccaggccccggatgacgaatatgcccgcttcgtggccaacttccccttcgag
gaaaccgccgatcagcgcgtggccattcaggcggtaatcgccgacatgacggctcctcgc
cccatggatcgcgtggtgtgtggcgatgtcggcttcggcaagaccgaggttgccatgcgc
gccgccttcctcgccgtgcaatccgagcgccaggtcgtagtactggtgccgaccaccctg
ctcgcccgtcagcactatgagaatttccgcgaccgcttcgccgacaccgctgtcaatatc
gaactgatctcccgctttaccagtggcagtgggcagaacgaaaccctcgagcgtatccgt
gacggcaagtccgatatcatcatcggcactcacaaactgctgtctcgtcagctcagcttc
ccacgcctgggactagccatcatcgacgaggagcatcgtttcggtgtcgcacagaaagag
cggctcaaaggcatgcgcagcgaagtcgatgtactgacgctgaccgccacaccgatcccg
cggacactgaacatggcaatgagtggcattagagatctgtcgatcattgccacccctcct
gcccgccgcttgtcggtcaagacgtttgtccaacagcgcgaggaagcggtgatcaaggag
gccatcctgcgcgagatcctgcgtggcggtcaggtctactacctgcacaatgaggtcaag
accatcgaggccgccgccgagaaactgcgggaactggtcccggaagcccgtgtcggcgtt
gcccatggccagctacccgagcgctcgctggagcgcgtgatgtcggacttctaccacaag
cgcttcaacgtgctggtgtgctcgaccatcatcgaaaccgggatcgatgtgcctaccgcc
aacaccatcatcatcgaacgcgccgacaagtttggtctcgcccagttgcaccaattacgc
ggccgcgttggccgcagccaccatcaggcctatgcatacctgctggcaccgccgccccgc
gccatgacccgagacgccctcaagcgcctcgaggccatcggtcaggccgaggatcttggt
gcaggcttcaccctggccagtcatgacatggaaattcgtggcgcaggcgagcttctgggc
gacgaacagagtggacagatggaagccattggttacagcctctatatgcagatgctcgat
cgtgcggtgaaggccatccgtgaaggccgcactccgaatatcgaggccccgctggaacaa
ggtgtcgaagttagcctcaatcttcctgcgttgatccccgacgactacctgcacgatgtg
cagcaacgactggtaatgtacaagcgaattgccaatactcagaatgatggcgaactcaag
gagcttcgcgtcgagatgatcgaccgctttgggcttctacccggcccggtcaagacacta
ctgcgccagacccgcctgaggcatagagccgaacgcctgggggttgcgcgtctcgaggcc
ggcgcagagcgtggacgcatcattttcgggcgacacacagcggtggacccgctggtgctg
gttgagatgattcagcatgcaccacagacctatcgactggaaggcgccgacacattgcgc
ttccagtcctcgatggacaacgaagaggctcgctttcaggccgtcgagcagttgctggac
actctcaaccgcaagacagaggcagcctga
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