Hyaena hyaena (striped hyena): 120230740
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Entry
120230740 CDS
T07257
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hhv
Hyaena hyaena (striped hyena)
Brite
KEGG Orthology (KO) [BR:
hhv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hhv03016
]
120230740 (RTCB)
Enzymes [BR:
hhv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
120230740 (RTCB)
Transfer RNA biogenesis [BR:
hhv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
120230740 (RTCB)
Prokaryotic type
tRNA splicing ligases
120230740 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
120230740
NCBI-ProteinID:
XP_039086403
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQFLDKINKNCWRIKKGFVPNMQVEGVFYVNDALEKLMFEELRNACRGGGVG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgcagctataatgatgagctgcagttcttggataagatcaataaaaactgctgg
agaatcaagaagggcttcgtgcccaacatgcaggttgaaggagttttctatgtgaatgat
gctctggaaaaattaatgtttgaggaattaagaaatgcctgtcgaggtggtggtgttggt
ggcttcctgccagccatgaaacaaattggcaacgtggcagccctgcctgggattgttcat
cgatctattggtcttcctgatgtccattcaggttatgggtttgctattgggaatatggca
gcctttgatatgaatgaccccgaagcagtggtatccccaggtggtgtcggatttgacatc
aactgcggagtccgcttgctcagaaccaatttagatgaaagcgatgtccagccagtgaag
gagcagctcgcccaggctatgtttgaccacattcctgttggggtgggatcaaaaggtgtc
atccccatgaatgccaaagacttggaggaggccttggagatgggtgtggactggtcccta
agggaaggctatgcctgggctgaagacaaggagcactgtgaggagtacggaaggatgttg
caggccgatcccaacaaggtctccgcaagggctaagaaaagaggccttcctcagttgggg
accctgggagcaggcaaccactatgcagaaatccaggttgtggatgagattttcaatgag
tacgctgctaagaaaatgggcattgaccataagggacaggtgtgtgtgatgatccacagc
gggagcagaggcttgggccaccaagtagccacagatgcactggttgctatggaaaaagcc
atgaagagagacaagatcatagtcaatgaccggcagttggcttgtgctcggatcgcttcc
ccagagggtcaggactacctgaagggaatggcagctgctgggaactatgcctgggtcaac
cgctcttccatgaccttcttaactcgtcaggcttttgccaaggtcttcaacacaactcct
gatgacttggacctgcacgtgatctatgatgtttctcataatattgccaaagtcgaacag
catgtggtggatggaaaggaacggacgctgttggtgcacaggaaaggatccacccgagct
tttcctcctcaccatcccctcattgctgttgattatcaactcactggacaaccagtgctc
attggtggcaccatgggcacctgtagttacgttcttactggcactgaacagggcatgact
gagaccttcggaacaacttgtcacggagcgggccgtgcactgtcccgagcaaaatctcga
cgtaatttagatttccaggatgtcttggacaaactggcagatatggggatcgccatccgc
gttgcctcacccaaactggttatggaggaggctcctgagtcctataagaacgtgaccgac
gtggtgaacacctgccatgacgccggcatcagcaagaaggccattaaactgagaccgatt
gccgtgatcaaaggctag
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integrated database retrieval system
