Hyaena hyaena (striped hyena): 120231378
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Entry
120231378 CDS
T07257
Symbol
POLR2A
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
hhv
Hyaena hyaena (striped hyena)
Pathway
hhv03020
RNA polymerase
hhv03420
Nucleotide excision repair
hhv05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
hhv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
120231378 (POLR2A)
09124 Replication and repair
03420 Nucleotide excision repair
120231378 (POLR2A)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
120231378 (POLR2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhv03021
]
120231378 (POLR2A)
03400 DNA repair and recombination proteins [BR:
hhv03400
]
120231378 (POLR2A)
Enzymes [BR:
hhv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
120231378 (POLR2A)
Transcription machinery [BR:
hhv03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
120231378 (POLR2A)
DNA repair and recombination proteins [BR:
hhv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
120231378 (POLR2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
120231378
NCBI-ProteinID:
XP_039087414
LinkDB
All DBs
Position
Unknown
AA seq
1942 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPS
YSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPS
SPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKY
SPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYS
PTSPTYSLTSPAISPDDSDEEN
NT seq
5829 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggtggccccccctccggggacagcgcatgcccgctgcgcaccatcaagcga
gtgcagttcggagtcctcagtccggatgaactgaaacgaatgtccgtgacggagggtggt
atcaagtaccccgagacgacggagggaggccgccccaagcttgggggcctgatggatccg
aggcagggggtgattgagcggactggccgctgccagacctgtgcgggaaacatgacagag
tgtcctggccactttggccacattgagctggccaaacctgtgtttcacgtgggcttcctg
gtgaagacgatgaaagttctgcgctgcgtctgcttcttctgctccaaactgctcgtggat
tctaacaacccaaagatcaaggacattctggccaagtccaaggggcagcccaagaagcgg
ctcacacacgtctacgacctgtgcaagggcaagaacatctgcgagggcggggaggagatg
gacaacaagttcggcgtggagcagcccgagggcgacgaggacctcaccaaagaaaagggc
cacggcggctgcggccgctaccagccccggatccggcgctccggcctcgagctgtatgct
gagtggaagcacgtgaatgaggactcgcaggagaagaagatcctgctgagccccgagcgg
gtgcacgagatcttcaagcgcatctccgacgaggagtgcttcgtgctgggcatggagccc
cgctacgcgcggcccgagtggatgatcgtcacggtgctgcccgtgcccccgctgtctgtg
cggcccgccgtcgtgatgcagggctcggcccgcaaccaggacgacctgacgcacaagctc
gccgacatcgtgaagatcaacaaccagctgcggcgcaacgagcagaacggcgcggcggcg
cacgtcattgccgaggacgtgaagcttcttcagttccacgtggccaccatggtggacaac
gagctgcctggcctgccgcgcgccatgcagaaatccgggcgccccctcaagtccctgaag
cagcggttgaagggcaaggaaggccgggtccgggggaacctgatgggcaagcgtgtggac
ttctcggcccgcaccgtcatcacccccgaccccaacctctccatcgaccaggtcggcgtg
ccccgctccatcgctgccaacatgacgtttgcggagatcgtcacgccgttcaacatcgac
aggctccaggagctggtgcgcaggggcaacagccagtacccgggcgccaagtacatcatc
cgggacaatggcgaccgcatcgacctgcgcttccaccccaaacccagcgaccttcacttg
cagaccggctacaaggtggaacggcacatgtgtgacggagatatcgttatcttcaaccgg
cagccgactttgcacaaaatgtccatgatggggcatcgggttcgcatcttgccctggtca
actttccgcttgaatctgagtgtgacaactccgtacaatgccgattttgatggggacgag
atgaatttgcacctgccgcagtctctggagacccgggcagagattcaggagctcgccatg
gtgccgcgcatgatcgtcaccccgcagagcaatcgccccgtcatgggcatcgtgcaggac
acgctcaccgcagtgcgcaaattcacaaagagagatgtcttcttggagcggggcgaggtg
atgaacctcctgatgttcctgtccacgtgggatgggaaggtcccccagccggccatcctg
aagccccggccgctgtggacgggcaagcagatcttctccctcatcatcccgggccacatc
aactgcatccgcacccacagcacccaccccgacgacgaggacagtggtccctacaagcac
atctctcccggggacaccaaggtggtggtggagaacggggagctgatcatgggcatcctg
tgcaagaagtcgctgggtacgtctgccggctcgctggtgcacatctcgtacctggagatg
ggccacgacgtcacacggctcttctactccaacattcagactgtcattaacaactggctg
ctcatcgagggtcacaccattggcatcggggattccattgcggactccaaaacttaccag
gacattcagaacaccatcaagaaggccaagcaggatgtgatagaggtcatcgagaaggca
cacaacaacgagctggagcccacgccggggaacactctgcggcagacattcgagaaccag
gtgaaccgtattctcaatgacgcccgagacaagaccggctcctctgcccagaagtccctc
tctgaatacaacaacttcaagtctatggtcgtgtctggggccaaaggttctaagatcaac
atctcccaggtcatcgccgtcgtcggacagcagaatgtagagggcaagcggatcccgttc
ggcttcaagcaccggactctgccccacttcatcaaggacgactacgggcccgagagccga
ggcttcgtggagaactcctacctggccggcctcacgcccaccgagttcttcttccacgcc
atggggggtcgcgaggggctcatcgacactgccgtcaagactgctgagactgggtacatc
cagcggcggctcatcaagtccatggagtcggtgatggtgaagtacgacgccactgtgcgc
aactccatcaaccaggtggtgcagctccgctacggcgaggacggcctggctggcgagagc
gtcgagttccagaacctggccaccctcaagccatccaacaaggcctttgagaagaagttc
cgcttcgattacaccaacgagagggccctgcggcggaccctgcaggaggacctggtcaag
gatgtgctgagcaacgcgcacatccagaacgagctggagcgcgagttcgagcggatgcga
gaggaccgggaggtgctcagggtcatcttcccgaccggtgacagcaaggtggtcctcccc
tgcaacctgctccgcatgatctggaacgcgcagaagatcttccacatcaaccctcgcctt
ccctcggacctgcaccccatcaaggtcgtggagggagtcaaggaactgagcaagaagctc
gtgatcgtgaacggggacgaccccctgagccggcaagcccaggagaacgccacgctcctc
ttcaacatccacctgcgctccaccctgtgctcccgccgcatggccgaggagttccggctc
agcggggaggccttcgactggctgctcggggagatcgagtccaagttcaaccaagccatc
gcccaccccggggagatggtgggggccctggccgcgcagtccctcggagagcccgccacc
cagatgaccttgaacaccttccactacgctggcgtgtctgccaagaacgtgacgctgggc
gtaccgcgactcaaggagctcatcaacatttccaagaaaccgaagaccccttccctcacc
gtcttcctgctgggccagtctgctcgggacgccgagagagccaaggacattctgtgccgc
ctggagcacacgaccttgaggaaggtgaccgccaacaccgccatctactacgaccccaac
ccccagagcacggtggtggccgaggaccaggagtgggtgaacgtctactacgagatgccg
gactttgacgtggcccgaatctccccctggctcttgcgggtggagctggaccggaagcac
atgacggaccggaagctgaccatggagcagattgccgaaaagatcaatgctggctttggc
gacgatttgaactgcatctttaacgatgataacgcggagaagctggtgctacggattcgc
atcatgaacagcgatgagaacaagatgcaagaggaggaagaggtggtggacaagatggat
gacgacgttttcctgcgctgcatcgagtccaacatgctgacggatatgaccctgcagggc
attgagcagattagcaaggtgtacatgcacctgccgcagacggacaacaagaaaaagatt
attatcacggaggacggggagttcaaggccctgcaggagtggatcctggagacagatggc
gtgagcctgatgcgggtgctgagtgagaaggacgtggaccctgtgcgcaccacgtccaac
gacatcgtggagatcttcacggtgctgggcatcgaggccgtgcggaaggccctggagcga
gagctctatcacgtcatctccttcgacggttcctacgtcaactatcgccacttggccctc
ctgtgcgataccatgacctgtcgtggccacttaatggccatcacgcgacacggagtcaac
cggcaggatacgggcccgctcatgaaatgctcctttgaggaaacggtggacgtgctcatg
gaagccgccgcgcacggagagagcgaccccatgaagggcgtgtctgagaacatcatgctg
ggccagctcgccccggccggcaccggctgcttcgacctcctgctggacgccgagaagtgc
aagtacggcatggagatccccaccaacatccccggcctgggggccgccggacccactggc
atgttcttcggctcggcgcctagtcccatgggagggatctctccggccatgacaccttgg
aaccagggcgccacccccgcctacggcgcctggtcccccagcgtgggcagtgggatgacc
cccggggcagctggcttctcccccagtgctgcttcggacgccagcggcttcagcccaggc
tactcgcctgcgtggtcccccacgccgggctccccgggctccccgggcccctcgagcccg
tacatcccctcgccaggcggggccatgtctcccagctactcccccacgtctccagcctac
gagcctcgctcccccgggggctacacaccccagagcccctcgtactcacccacctcgccc
tcctactcgcccacctcgccctcctactcgcccaccagtcccaactactctccgacttcc
cccagctactccccgacttcccccagctactccccgacttcccccagctactccccgacc
tctcccagctactccccgacctctcccagctactccccgacctctcccagctactccccg
acctcccccagctattctcccacctcccccagctactcccctacgtcccccagctactcc
cccacatccccaagctactctccaacatccccgagttactccccaactagccctaactac
tctccgaccagtcccaattataccccaacgtcccccagctacagcccgacgtcacccagc
tactccccgacgagccccaactacacgccgacgagccctaactacagcccgacctctccc
agctactctccgacttcacccagctactccccgacctcgccaagctactccccgtccagc
ccacgatacacaccgcagtctccgacctacaccccgagctcccccagctacagcccgagc
tcccccagctacagccccacctcgcccaagtacacccccaccagtccctcctacagcccc
agctccccggagtacaccccgacctcccccaagtactcgcccaccagccccaagtactcg
cccaccagccccaagtactcgcccaccagccccacctactcgcccaccaccccaaaatac
tccccgacgtcccctacttactcgccgacctctccagtctataccccaacctcccccaag
tactcgcctactagccccacctactcgcccacttcccccaagtactcgcccaccagcccc
acctactcgcccacgtcccccaaaggctccacctactcgcccacctcccccggctactcg
cccaccagccccacctacagcctcaccagcccggccatcagcccagacgacagtgatgag
gagaactga
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integrated database retrieval system
