Hyaena hyaena (striped hyena): 120239968
Help
Entry
120239968 CDS
T07257
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hhv
Hyaena hyaena (striped hyena)
Pathway
hhv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120239968 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhv03019
]
120239968 (MTREX)
03041 Spliceosome [BR:
hhv03041
]
120239968 (MTREX)
03009 Ribosome biogenesis [BR:
hhv03009
]
120239968 (MTREX)
03016 Transfer RNA biogenesis [BR:
hhv03016
]
120239968 (MTREX)
Enzymes [BR:
hhv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120239968 (MTREX)
Messenger RNA biogenesis [BR:
hhv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
120239968 (MTREX)
Spliceosome [BR:
hhv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120239968 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
120239968 (MTREX)
Ribosome biogenesis [BR:
hhv03009
]
Eukaryotic type
Pre-60S particles
Helicases
120239968 (MTREX)
Transfer RNA biogenesis [BR:
hhv03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
120239968 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
120239968
NCBI-ProteinID:
XP_039100464
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAPGTKKDKEKEKGKWKGPPGSAEKGGKHFDGKLQSESTNTA
KTKRDADFEGTDEPIFGKKPRVEESITEDLSLADLMPKVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcttttggagatgagctcttcagcgtgtttgaagacgactccaccaccgcg
cccggaactaaaaaagacaaagagaaggagaaggggaaatggaaggggccgccagggtct
gcggaaaagggcgggaaacattttgatggtaaattacaatcagagtcaactaacactgcc
aaaaccaagagagatgcagattttgagggcacagatgaacccatatttggaaagaagcct
agggtggaagaatccataactgaagatttaagtttggcagacttgatgcccaaagtcaag
gtacaatcagttgaaactgttgaaggatgtacacatgaggttgcacttcctgcagatgaa
gattatttaccacttaaacctcgagttggaaaagctgcaaaggaatacccgttcattctt
gatgcttttcaaagagaagccattcagtgtgttgataataatcagtctgttttagtatca
gcacatacatcagcaggaaaaactgtatgcgctgagtatgccattgctttggccttaagg
gaaaaacaacgtgtaatatttaccagcccaattaaggctctgagtaaccagaaataccga
gaaatgtatgaagagtttcaagatgttggtttgatgactggagatgttactattaatcct
acagcatcttgtcttgttatgaccacagagattttgagaagtatgctgtacagaggttct
gaagttatgcgagaagttgcttgggtcatatttgatgaaattcattacatgagagattca
gagcgtggtgttgtatgggaagaaactattattttgcttcctgacaatgtccactatgtc
tttctttcggctacgattccaaatgcccgacagtttgctgaatggatttgccatttacat
aaacagccttgtcacgtaatttacacagattatcggcctacaccattgcaacactacatt
tttccagcagggggagatggcctgcaccttgtggttgatgaaaatggtgacttcagagaa
gataattttaatactgcaatgcaagtacttcgagatgctggtgatttggcaaaaggagat
cagaaggggcggaaaggaggaacaaaaggaccatcaaatgtgttcaagattgtgaagatg
attatggaaagaaattttcaacctgtaattattttcagttttagtaagaaggattgtgaa
gcctatgcacttcagatgaccaaattagattttaacacagatgaagaaaagaagatggtt
gaagaagtattcagtaatgctattgactgtttgtctgatgaagataaaaaactccctcag
gtcgaacatgtacttcctcttttgaagcggggaattggtattcaccatggtggtttactt
cctattttgaaagaaacgatagaaattctcttttctgaaggattgataaaggccttattt
gccacagagacttttgccatgggaattaatatgccagctagaactgttttatttacaaat
gcccgaaaatttgatgggaaagatttccgatggatttcctctggtgaatacattcagatg
tctggtcgagctggaaggaggggaatggatgatagaggaattgtgatccttatggtggat
gaaaagatgagcccaacgattggaaaacagctacttaagggctcagctgatcctctaaat
agtgctttccacttgacctacaacatggttttgaatttactacgtgtagaagaaattaat
cctgagtacatgttggaaaaatccttttaccagtttcaacattatagagcaattccagga
gtagtagagaaggtaaagaactcagaagaacagtataataaaatagtaataccaaatgag
gaaagtgttgtcatctattataagatcagacagcagcttgccaaactgggtaaagaaatt
gaagaatatattcacaaaccaaaatattgcttaccatttctacagccaggtcgtttggta
aaggtgaagaatgaaggagatgattttggctggggtgtagtggtaaatttctccaaaaag
tcaaatgttaagcctaattctggtgaactggatcctttatatgtagtagaagtacttctg
cgctgtagcaaagaaagtttgaaaaattcagctactgaggctgcaaaaccagctaagcct
gatgagaaaggagagatgcaggttgttccagttttggtacacctgctgtctgctatcagc
agtgttaggctttacattcctaaagaccttcgaccagtggataatagacagagtgtttta
aaatcaatacaggaagttcagaagcgttttcctgatggtgttcctttattagatcctatt
gatgatatgggcattcaagatcaagggctaaaaaaagttatccagaaagtagaggctttt
gaacatagaatgtattctcatccacttcacaatgatccaaatttggaaacggtgtatacg
ctttgtgaaaaaaaagcacagattgcaatagacattaaatctgcaaaacgagaactaaag
aaagcaagaactgtcctccaaatggatgagctcaaatgccgcaaacgtgttttaaggaga
ttgggatttgctacttcttctgatgtcatagagatgaaaggacgagtggcttgtgagata
agcagtgctgatgagctcctcctaactgagatgatgtttaatggccttttcaatgatctg
tctgcagaacaggcaacggcactactaagctgcttcgtgtttcaagagaattcaagtgag
atgcctaaattaaccgagcagttagcaggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagccaaattggaaattgatgaggagacttatctaagc
tcattcaaacctcacttaatggatgtagtatatacctgggcaactggagctacatttgct
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctg
gaagaactgcttagacagatgtgtcaagcagcaaaagccattggaaacactgagctggaa
aacaaatttgcagaaggaatcaccaaaatcaagagagacattgtatttgctgccagcctc
tacttataa
DBGET
integrated database retrieval system
