Hathewaya histolytica: NCTC503_01772
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Entry
NCTC503_01772 CDS
T05971
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hhw
Hathewaya histolytica
Brite
KEGG Orthology (KO) [BR:
hhw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hhw03016
]
NCTC503_01772 (rtcB)
Enzymes [BR:
hhw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NCTC503_01772 (rtcB)
Transfer RNA biogenesis [BR:
hhw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NCTC503_01772 (rtcB)
Prokaryotic type
tRNA splicing ligases
NCTC503_01772 (rtcB)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
EPS8_2nd
Motif
Other DBs
NCBI-ProteinID:
VTQ91253
UniProt:
A0A4U9RKU8
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All DBs
Position
1:complement(1746639..1747844)
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AA seq
401 aa
AA seq
DB search
MMIDVKGKYNDAIIYTENIESDAIKQIETLCNQEFIKESKIRIMPDVHCGSGCTIGTTMT
IKDKVVPKLVGVDIGCGMEVIKIENRHIELQKLDKIIYRNIPSGFNIRDKEHKLSDEINL
NELKCRDEINHIRARRSIGTLGGGNHFIEVNKDNEGNLYIVVHSGSRHLGHEVASIYQEE
AYKSLNKNTKKDIELFIEELKSAGKDKEIQKELKRKKNETITDIPKNLAYLSGELFNDYI
HDMKIVQYFAELNRKAMIQEIIKGMKLRVIEQFTTIHNYIDTKNMILRKGAVSAQSGEKL
LIPINMRDGSLICIGKGNSDWNFSAPHGAGRIMSRSKAKNSFTLNQYKKTMTGIFTTSVN
KETLDECPLAYKPMEEIVHNIGDTVDIVHNIRPIYNFKASE
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgatgattgatgtaaaggggaagtataatgatgcgattatatatactgagaatattgaa
tcggatgcaataaagcaaatagaaacattgtgtaatcaagagtttataaaagaaagcaaa
ataagaataatgccagatgtacattgtgggtcaggttgcacaataggtacaaccatgaca
attaaggataaagttgttcctaaacttgtaggtgttgatattggttgtggaatggaggtt
ataaaaattgaaaatcgtcatattgagctacaaaaacttgataagataatttataggaac
ataccttctggttttaatataagagataaagaacataaattaagtgatgagattaattta
aatgagcttaaatgtagagatgaaattaatcatattagggcacgtagaagtattggaaca
ttaggtggaggtaaccactttatagaagttaacaaagacaatgagggaaatctttatata
gttgtacactcaggaagtcgtcatttgggacacgaagttgcaagtatatatcaagaagaa
gcttataaatcacttaataaaaatacaaaaaaagatattgagctatttatagaagagtta
aaatcagcaggaaaagataaagaaatacagaaggaattgaaaagaaaaaagaatgaaact
attacagatataccaaagaacttagcatatttatcaggagaactatttaatgattatatt
catgatatgaaaattgttcaatattttgcagaactaaatcgcaaggctatgattcaagag
ataattaaaggtatgaaacttagggtaatagagcaatttacaactattcataattatata
gatacaaagaatatgattttaagaaaaggtgcagtttcagctcaaagtggcgaaaaattg
ttgataccaataaatatgcgagatggtagtcttatttgcataggaaaagggaattcagat
tggaatttttcagcacctcatggtgctggaaggattatgagtagatcaaaggctaaaaat
tcatttacacttaaccaatataaaaaaacaatgactggtatttttactacatctgtaaac
aaagaaactctagatgaatgccctcttgcatataaacctatggaagaaatagtacacaat
attggggatacagtagatattgttcataacataagaccaatatacaactttaaagcatca
gaataa
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