Hathewaya histolytica: NCTC503_02446
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Entry
NCTC503_02446 CDS
T05971
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hhw
Hathewaya histolytica
Pathway
hhw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hhw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC503_02446 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhw03021
]
NCTC503_02446 (rpoB)
03400 DNA repair and recombination proteins [BR:
hhw03400
]
NCTC503_02446 (rpoB)
Enzymes [BR:
hhw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC503_02446 (rpoB)
Transcription machinery [BR:
hhw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC503_02446 (rpoB)
DNA repair and recombination proteins [BR:
hhw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC503_02446 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
VTQ95115
UniProt:
A0A4U9RS13
LinkDB
All DBs
Position
1:complement(2437192..2440917)
Genome browser
AA seq
1241 aa
AA seq
DB search
MVHPVQVGKRTRMSFSKVKEVTDMPNLIEVQLNSYKWFLEEGLKEVFDDINPIQDYTGNL
VLEFVDYSLEEENVKYLVEECKERDSNYAAPLKVRVRLRNNETGEIKEQEVFMGDFPLMT
EQGTFIINGAERVIVSQLVRSPGSYYNYTVDKTGKKLYSATVIPNRGAWLEYETDSNNVV
YVRIDKTRKLPITILARAMGYGSDNQLVDFFGEEERLSATIEKDNTKTEEEALLEIYKRL
RPGEPPTVESAKSLIDVLFFDAKRYDLSRVGRYKFNKKLSISQRIMNNIAGENIVDPKTG
EILVEEGIKISREMAFKIQNLGINKVEIRIEDKNIRVIGNNFVDINAHVDFDISDLNIKE
LVHYTTLKDILDNFTEEDQIKDEIKKNISKLVPKHIIKDDILATISYELGLAYEIGEIDD
IDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMTIQDQEGITPQALINIRPVTASIKE
FFGSSQLSQFMDQTNPLSELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETP
EGPNIGLINSLATYAKVNDYGFIETAYRIVKDGRVTDEIRYFTADEEDGYLVAKANEILD
EDGYFIDKKVAIRDKEEVLIVPREEVDLMDVSPRQIVSVATAMIPFLENDDASRALMGSN
MQRQAVPLLKPSAPIVGTGIENKAAVDSGVLPKAKNAGVVEYVSANEVRIRRDSDGAVDT
YKLLKFKRSNQGTCINQRPLVSKGDVLKAGDVIADGPSTDLGEIALGKNIIIGFITWEGY
NYEDAMLVSEELVRDDIFTSIHIEEYEAEARDTKLGPEEITRDIPNVGDDALKDLDERGI
VRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGATGIIVD
VKVFTRENGDELPPGVNKLVRCYIAEKRKISVGDKMAGRHGNKGVISRVLPVEDMPFLPD
GRPVQICLNPLGVPSRMNIGQVLEVHLGWAAHQLGWHIATPVFDGASEDDIAEHLIKAGY
NEDGKTVLYDGRTGDPFDNKVTVGIMYILKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQ
FGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENIPEPGVPESFK
VLIKELQALCLDVKVLDDSYDEIKIKEFAADESEDLDVNIEGKEDSNYVPPVEENIEANV
ESNEESNVTSEESDEQFEYDDDISFDNLDNELELNDINDEH
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atggtacatcctgtccaagttggtaaaagaaccagaatgagcttctcaaaggttaaagaa
gtaactgatatgcctaacttaatagaagttcaacttaattcttacaaatggtttttagag
gaaggattaaaagaagtatttgatgacattaatccaattcaagactatactgggaattta
gttttagaatttgttgattatagtttagaagaagaaaatgtaaaatacttagtagaagaa
tgtaaagagagagattcaaactatgcagcaccattaaaagttagggtaaggcttcgtaat
aacgaaactggagaaattaaagaacaagaagtatttatgggagatttcccactaatgaca
gagcaaggaacatttataataaatggtgcagaaagggttatagtaagccaattagtaagg
tcaccaggttcttactataattacactgtggataaaacaggtaaaaagttatattcagct
actgtaataccaaataggggagcatggcttgaatatgaaacagactcaaataatgtagtg
tatgttagaattgataaaactagaaaattacctattactatattagctagagctatggga
tatggtagcgataatcaacttgtagatttcttcggagaagaagaaagattaagtgctaca
attgaaaaagataacactaaaactgaagaagaagcattacttgagatatataagagatta
agaccaggagagccaccaacagtagagagtgcaaaatctcttatagatgtattatttttt
gatgcaaagagatatgatttgtctagggttggtagatataaattcaataagaaattatct
ataagccagagaataatgaacaatattgcaggtgaaaatattgtagatccgaaaactgga
gaaattctagttgaagagggaataaaaatctcaagagagatggcttttaaaatacaaaat
ttaggtataaacaaagtagaaattagaattgaagacaagaacataagagttattggaaat
aactttgttgatataaatgctcacgtggattttgatatctctgatttaaatataaaagag
ctagttcattatactactttaaaagatatattagataatttcactgaagaagatcaaatt
aaggatgaaattaaaaagaatataagtaaattagttccaaaacatattataaaagatgat
atattagccacaataagctatgaattaggattagcatacgaaattggtgaaatagatgat
atagaccatttaggaaatagaagacttaggtctgtaggtgaattattacaaaaccaattt
agaattggtctttcaaggatggagagagtagttaaagaaagaatgactattcaagaccaa
gaaggaattactccacaagcattgataaatataagaccggttacagcatctataaaagag
ttctttggaagttcacagttatcgcaattcatggatcaaacaaatcctttgtcggagtta
actcataaaagaagactatctgcattaggaccgggtggattatcaagagagagagcagga
tttgaagtaagagacgtccaccattctcattatggaagaatgtgtcctatagaaactcct
gaaggacctaatataggacttattaactcattagctacttatgctaaagttaatgattat
ggatttattgaaactgcctatagaattgtaaaagatggaagagtaactgatgaaattaga
tactttactgcagatgaagaagatggttatttagtggctaaggctaatgaaatattagat
gaagatggatatttcatagataaaaaagtagctattagagataaggaagaggttctaata
gtacctagggaagaagtagacctaatggacgtatctcctagacaaatagtatctgtagct
acagctatgatacctttccttgaaaacgatgatgccagccgtgcattaatgggatctaac
atgcaacgtcaggcagtgccattacttaaaccaagtgcaccaatagtaggaactggtatt
gaaaataaggcagcggtagactcaggggttttacctaaagctaaaaatgctggagttgtg
gaatacgtaagtgctaatgaagttagaattagaagagattcagatggcgctgtagataca
tataaactccttaaatttaagcgttctaaccaaggtacatgtataaatcaaagaccacta
gttagcaaaggcgatgtattaaaggcaggagatgtaatagcagatggaccatctactgat
ttaggagaaatcgcattaggtaaaaatataattataggatttataacatgggaaggatac
aactatgaggatgctatgttggtatctgaagagttggttagagatgatatatttacttct
attcatattgaagaatatgaagcagaggcaagagatactaaattaggaccagaagaaatt
actcgtgatatacctaatgttggcgacgatgccttaaaggacttggatgagagaggaatt
gtaagaataggtgctgaggttagggctggagatatattggttggtaaagttacacctaag
ggtgaaacagaacttacagcagaagaaagattactaagagctattttcggcgaaaaagct
agagaagtaagagatacatctttaagagtaccacatggagcaacaggtataatagtagat
gtaaaagtatttacaagggaaaatggagatgaacttcctcctggagtaaataaacttgta
agatgttatatagcagaaaagagaaaaatatctgtaggagataagatggctggaagacac
ggtaataaaggtgtaatttctagggtgttgccagtcgaagatatgcctttcctaccagat
ggaagaccagttcagatatgcttaaacccattaggggttccttctcgtatgaatattggt
caggttttagaggttcaccttggatgggcagctcatcaattaggatggcacatagcaact
cctgtatttgatggagcttcagaggatgatatagcagaacatcttattaaagcaggttat
aatgaagatggtaaaactgtattatatgatggaagaacaggagatccattcgacaataaa
gtaactgtaggtataatgtatatcttaaaacttcaccatttagttgacgataagattcac
gcaagatctacaggaccatattcattagtaactcagcaaccacttggaggtaaagcacaa
tttggaggccaaagatttggtgagatggaagtttgggctttagaggcttatggtgctgca
tatactctacaagaaatactaacagtgaaatcagacgacgtggtaggtagggtaaaaaca
tatgaggcaatagttaaaggtgaaaatatacctgaaccaggagttcctgaatcatttaaa
gttcttataaaagaacttcaagccctatgtttagatgtaaaagtacttgatgattcatat
gatgaaataaaaattaaagagtttgcagcggatgagtcagaagacttagatgttaatatc
gaaggaaaagaagattcaaactatgttccaccagtagaagaaaatatagaagctaatgtg
gaatctaatgaagaatctaatgtcacatcagaagaatcagatgaacaatttgaatatgat
gatgatatatcttttgataaccttgacaatgaattagaattaaatgatataaatgatgaa
cactag
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