Hathewaya histolytica: NCTC503_02587
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Entry
NCTC503_02587 CDS
T05971
Symbol
cshA_2
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hhw
Hathewaya histolytica
Pathway
hhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC503_02587 (cshA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhw03019
]
NCTC503_02587 (cshA_2)
03009 Ribosome biogenesis [BR:
hhw03009
]
NCTC503_02587 (cshA_2)
Enzymes [BR:
hhw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC503_02587 (cshA_2)
Messenger RNA biogenesis [BR:
hhw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC503_02587 (cshA_2)
Ribosome biogenesis [BR:
hhw03009
]
Prokaryotic type
rRNA helicases
NCTC503_02587 (cshA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
MMR_HSR1_Xtn
AAA_30
RRM_9
DUF3818
AAA_19
DsrH
DUF2689
Motif
Other DBs
NCBI-ProteinID:
VTQ95804
UniProt:
A0A4U9RTN2
LinkDB
All DBs
Position
1:complement(2575785..2577362)
Genome browser
AA seq
525 aa
AA seq
DB search
MEKNKFYNLGLKAEVLKAIDYMGFTEPSQIQEQVIPVLLQGEDVIGQAQTGTGKTLAFGA
PMLNNLVKSKGQIKSIVLAPTRELAIQVSEELSRISKYMDMELLAVYGGYSIEKQIRAIK
RGVDIIVGTPGRVLDLIRRKVINLSYVDFLILDEADEMLNMGFIQDIEDIVKNCKEDRQT
LLFSATMPKEIKNLAKRYMKKDAKHIAVVKKSMTVSSVEQYYFEVKPKKRFEAFCRIIDV
DNPEAAIIFCKTKRGVDELVESMQSRGYSVEGMHGDMSQNQRMNTLRKFKEGNLKFLVAT
DVAARGIDVENVTHVINYDLPQDVESYVHRIGRTGRANKQGVAYTIVTGRELGTIRQIEK
HTKGKIDRKDLPKIEDIFNSKCEDILNRVYKNIETDDYKKFLSVIENSSEKISAENMAAA
LMSLIYNKEVSFDYTEDIIEDKANYVRLFLTVGRIDKLSPKKLLEFIDENSGIGKEHIGT
IDILEKFSFINVQEDVVKNIITNCSGKKFLGRKLKIEVSTKSKKR
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
ttggaaaaaaataaattttataatttagggcttaaagcagaagtgcttaaagctatagac
tacatgggatttacagaaccatcacaaattcaagagcaagttataccagtattgttacaa
ggtgaggatgtaataggtcaagcacaaacaggtacaggaaagaccttagcatttggagcg
cctatgctaaataacttggttaaatctaaaggacaaattaagagtatagtacttgcacca
actagagaattagctattcaagtaagtgaggaattaagccgtatatctaagtatatggat
atggaattattagcagtatatggtggctatagcatagaaaaacaaataagagctatcaaa
agaggtgtagatataattgtaggtactcctggaagagtattagatcttatacgtagaaaa
gttattaatttaagttatgtagattttcttatccttgacgaagcagatgaaatgcttaat
atgggctttattcaagatatagaagacatagttaagaattgtaaagaggacagacaaact
ttactattctcagctactatgcctaaggaaattaagaatttagctaaaagatatatgaag
aaagatgcaaagcacatagcagtagttaaaaaatctatgactgtatcttcagttgagcag
tattattttgaagttaaacctaaaaagagatttgaagcattctgtagaataattgatgta
gataatccagaagcagctataatattctgtaaaactaaaagaggtgtagatgagttagta
gaatctatgcaatctagaggttatagtgtggaaggcatgcatggtgacatgagccaaaat
caaagaatgaatactttaagaaagtttaaagaaggaaatcttaaattcttagtagcaaca
gatgttgcagcgagaggtatcgatgtagaaaatgtaacacatgttataaactatgacctt
ccacaagatgtagaatcttatgttcatagaattggaagaactggtagagcaaataaacaa
ggagtagcttatacaatagttactggaagagaacttggtactataagacaaatagaaaaa
catactaaaggcaagatagatagaaaagatcttccaaagattgaagatatatttaattca
aagtgtgaagatatacttaatagggtatacaaaaatattgaaacagatgattataagaag
ttcttatctgttatagaaaattcaagtgagaaaataagtgcagaaaatatggcagcagcc
ttaatgagcttgatatataataaagaagtgagttttgattatacagaagatattatagaa
gataaggcaaactatgtaagattattcttaacagttggtcgtattgataaattatctcct
aaaaaattattagaattcatcgatgagaattctggtataggcaaagaacatataggaact
atagatattttagaaaagttttcatttataaatgtacaagaggatgttgttaaaaacata
atcacgaattgctcaggtaagaaattcctaggaagaaaacttaagattgaagtgtctact
aagtcaaagaaaagataa
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