Haliscomenobacter hydrossis: Halhy_0158
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Entry
Halhy_0158 CDS
T01491
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hhy
Haliscomenobacter hydrossis
Pathway
hhy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Halhy_0158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhy03019
]
Halhy_0158
Enzymes [BR:
hhy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Halhy_0158
Messenger RNA biogenesis [BR:
hhy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Halhy_0158
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
SNF2-rel_dom
DsrH
CheB_methylest
Motif
Other DBs
NCBI-ProteinID:
AEE48071
UniProt:
F4KTS7
LinkDB
All DBs
Position
174404..175546
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AA seq
380 aa
AA seq
DB search
MTFKELNLIDPILHALESEGYTIPTPIQQKAIPVLLERKDLLGCAQTGTGKTAAFAIPIL
QLLYQDKGLSKGPRQLKALILTPTRELAIQISESFGAYGRNCGLKHAVIFGGVNQSKQVE
AIRGGLDILVATPGRLLDLMNQQLLSLQHINTFVLDEADRMLDMGFVHDVKRIITRLPQR
RQSLFFSATMPPEIQKLANTILSNPVKVEVSPISSTTEMVEQMVYFVEKRDKRNLLIQLL
RSPNVKSALVFTRTKHGADKINRDIVKAGIRSNAIHGNKSQNARQSALNGFKEGKLRVLV
ATDIAARGIDVDNLSHVINYDLPNIPETYVHRIGRTGRAGASGIALSFCDSEERAYLRDI
SKLIAKNIPSVNYHPEMELK
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgacttttaaggaattaaatttaattgatcctattcttcatgccctcgaaagtgagggc
tacaccattccaaccccgattcagcaaaaagccatccccgtgcttttagaaagaaaagac
ctcctgggttgtgcacagacgggtactggaaaaaccgccgcttttgcgattcctatttta
caattgctttaccaagataaaggcctttccaaagggcctcgacaactcaaagcgctcatc
ctcacccctacccgcgaattagccatccaaatcagcgaaagttttggtgcctatggccgc
aattgtggtttgaagcacgctgtcatttttggcggtgtcaatcaatccaaacaagtggaa
gccatccggggaggtttagacattttggtagctactccagggcgtttgttggacttgatg
aaccaacaattactgagtttgcagcacatcaatacctttgtgctggacgaagcagaccgc
atgctggacatgggctttgtacacgatgttaaacgcatcattacccgcttgccgcagcgc
aggcagtcgcttttcttttccgcaaccatgcccccggaaattcaaaaactggccaataca
attctctctaaccccgtaaaagtagaagtttcccccatttcttccactacggagatggtg
gagcaaatggtttattttgtggaaaaaagagacaaacgcaatttgctgatccaacttttg
agaagccctaatgtgaaatcggcgctggtgtttacccgtaccaaacatggcgcagataaa
atcaatcgcgacatcgtaaaggctggtatacgttccaacgccatccacggcaataagtcg
cagaatgcgcgccagagcgccctgaatggtttcaaagaaggtaagcttagggtcctggtc
gctaccgatattgccgcaagaggaatcgacgtagacaacctgagtcacgtaatcaattac
gatttgcccaatatccccgaaacctacgtacaccgcattgggcgtaccggacgtgccgga
gccagtggtattgcgctgtctttttgtgattcagaagaaagggcatatttacgcgacatc
agcaaactgatcgccaaaaatataccaagtgttaactaccatccagaaatggaattgaaa
taa
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