Haliscomenobacter hydrossis: Halhy_0260
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Entry
Halhy_0260 CDS
T01491
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hhy
Haliscomenobacter hydrossis
Pathway
hhy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Halhy_0260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhy03019
]
Halhy_0260
03400 DNA repair and recombination proteins [BR:
hhy03400
]
Halhy_0260
Enzymes [BR:
hhy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Halhy_0260
Messenger RNA biogenesis [BR:
hhy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Halhy_0260
DNA repair and recombination proteins [BR:
hhy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Halhy_0260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
DUF5805
Motif
Other DBs
NCBI-ProteinID:
AEE48172
UniProt:
F4KUZ6
LinkDB
All DBs
Position
323587..325485
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AA seq
632 aa
AA seq
DB search
MKPIDVLRQYWGHAQFRPQQEAIIQSVLDGRDTLALLPTGGGKSVCFQVPALCQPGICIV
ISPLIALMKDQVQNLQKKGIPALAIYAGMAYRDIDRLLDNCVHGEIKFLYLSPERLVSDL
ARARIKQMKVNLIAVDEAHCISQWGYDFRPPYLEIAKIREFFPQIPVMALTATATPEVVK
DIQEKLEFKHQHLFQSSFSRPNLAYIVRPTEAKEDQLIEILQKVPGSGVVYVRNRRRTKE
VAQLLQKKRISADYYHAGLTPDERSAKQDAWVSGRTRVMVSTNAFGMGIDKPDVRTVVHL
ELPDSLEAYFQEAGRAGRDGKKSFAVLLYNSNDRRSLEYQYEQAFPSLDEARKVYRALGS
FYQLALGGGQGESFDFEIATFAQNYGLEVIRVFNCLKLLEQEGLISVSEAVFTPSTLLIK
VDKERLYDYQLKHRELDKVLKIILRSYQGVFSSYVSFSENKLAEYCKIPHELLQKNLLRM
QQDEVIEYNPQKDKPQLSFIREREDANHLHFDTKLYNFRKSRHAERIKKALAYAEENRCR
SQQLLHYFGEKDAPACGVCDVCLERKKQDLDNEGFERLRQKITRLLSEEALPVKELVDSF
APKMRQEVLDTLAFLQQEGVIEEKNGKLFLKK
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaatcgatgtgctgcggcaatactgggggcacgcacaatttcggccccaacag
gaagccatcatccagtcggtgctggatggtagggacaccttggcgttgttgccaactgga
ggcggcaaatcggtttgttttcaagtaccggccttgtgccaacccggcatctgcatcgtc
atttcgcctttgattgccttgatgaaagaccaggtgcaaaacctgcaaaaaaaaggcatc
cccgcactggccatctacgcgggcatggcctaccgcgacattgatcgcctgctggacaat
tgtgtacacggcgaaatcaagttcctgtacctttcccccgaacgcctggtgagcgacctg
gctcgcgcccgcatcaaacaaatgaaggtcaacctcattgccgtagatgaggcgcactgt
atttcgcagtgggggtacgattttcgacctccgtacctcgaaattgccaaaattcgggaa
ttttttccccaaatcccggtaatggcccttacggctaccgctacccccgaagtggtgaag
gacattcaggagaaactggaatttaagcaccagcacctatttcaatcgagtttttcccga
cccaatttggcctacatcgtccggccaaccgaagccaaggaagaccaattgatcgagatc
ctgcaaaaagtacccggcagcggcgtggtgtacgtgcgcaatcgccgccgcacgaaggag
gtagcccaactcttgcaaaaaaaacgcatctctgccgattattaccacgctggactgacg
cctgatgaacgctcggccaaacaagacgcctgggtaagcggacgcacccgggtgatggtc
agcaccaacgcctttggcatgggcatcgataaaccggacgtgcgtacggtggtacacctg
gaattgcccgacagcctcgaagcctatttccaggaagcaggacgggcgggccgcgatggg
aaaaaatcgtttgcggtgcttttgtacaacagcaacgaccgcaggagtctggaataccaa
tacgaacaggcttttccgagcttggacgaagcccgcaaagtgtaccgcgccttgggtagt
ttttaccagctggcactgggcggcgggcagggcgaaagtttcgattttgagatcgccact
tttgctcaaaactatggtctggaagtgattcgggtgttcaattgtttaaaactcctggag
caagaaggtttgatcagtgtatccgaagcggtttttaccccctctaccctactcatcaag
gtggataaagaacgcctgtacgactaccagctcaaacaccgcgaactggataaagtgctg
aaaatcatcctgcgcagttaccagggggttttttctagttacgtcagttttagtgagaat
aagttggctgagtactgcaaaattccgcatgagttacttcaaaagaaccttttgcggatg
cagcaagacgaagtcatcgaatacaatccccaaaaagacaagccccaactgagttttatc
cgcgaacgggaagacgccaatcatctgcactttgacaccaaactgtacaactttcgcaaa
agccgccacgccgagcgcatcaaaaaagcgctggcctacgccgaggaaaataggtgccgc
agccagcaattgctccattattttggggaaaaagatgcccccgcttgtggcgtgtgtgat
gtgtgcctggagcgcaaaaagcaagatctggacaacgaagggtttgaacgtttgcgccaa
aaaatcacccgcttgttgagtgaagaagccctacccgtgaaggagttggtggattcattt
gccccgaaaatgcggcaggaagtgctggatactttggcttttttgcagcaggaaggggtg
attgaggaaaaaaacggaaagttgtttctgaaaaaatga
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