Haliscomenobacter hydrossis: Halhy_3470
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Entry
Halhy_3470 CDS
T01491
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hhy
Haliscomenobacter hydrossis
Pathway
hhy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hhy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Halhy_3470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhy03400
]
Halhy_3470
Enzymes [BR:
hhy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Halhy_3470
DNA repair and recombination proteins [BR:
hhy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Halhy_3470
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
Helicase_C
DEAD
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AEE51325
UniProt:
F4KWI5
LinkDB
All DBs
Position
complement(4370030..4373455)
Genome browser
AA seq
1141 aa
AA seq
DB search
MILNHYSPIPFPNFIIFAPVKNLQTLLDLYRQDTRTTSIVQELKNETPARVKLLELVGAQ
LSFVIAGVYHQHPANHLIVADNKEEAAYWQNDLAALFGQKRVHFFPDSFKQPLRFDELNQ
TNVLERTETINAVSNAARGQVIVTYPEALFERVVSPEVLSKSRIEIAVGEKLDPEFLMDV
LIEYKFTREEFVFEPGQFSLRGGIIDIFSFGNDLPYRVELFDDEVESIRTFNPLTQLSAQ
NISRVSIVPNINTRFKQEDKVSLFRVLKEDTVIWIRDFQVLIDRLQRCFEDAEKFAKTIS
ILDEGELAEVFRDRAFLFPKDVVEDVRLHPIILLSNAPQPLESTAQIQYGGKPQPSFNRN
FDLLIENLHANTAAGLTNYLFTENPKQVERFYAIFEDLRAKVEFYPIVQGLHEGFLDATL
KVACYTDHQVFERFHRYKLRQGYSKEQALNLRLLRDLQPGDFVTHIDHGIGQFKGLQTIN
VNGHVQECVRLVYKNNDLLYVSINSLHKIAKYVGKEGTPPQLNKLGSDAWRNLKAKTKKK
VKDIAGELIKLYAQRKASPGFAFAPDNYMQVELESSFIYEDTPDQLQATIDTKNDMTKPY
PMDRLICGDVGFGKTEVAIRAAFKAILDGKQVAVLVPTTILALQHAKTFGDRLKDFSATV
DYVNRFRTAGEKKQIFERLREGKIDLIIGTQALLNQEVKFKDLGLLIIDEEQKFGVASKE
KLRNFKVNVDTLTLTATPIPRTLQFSLMAARDLSIIRTPPPNRQPIHTEVRIFSEDIIKE
AIYYEVNRGGQVFFVHNRVKNLAEVEMMIRRLCPDVEVASAHGQMESDKLEKTLVDFIDK
QYDVLVCTNIIETGLDISNANTMLINNAHQFGMSDLHQLRGRVGRSNKKAYCYLFSPPMS
TLTSDARKRLRTLEEFSDLGSGFHIAMRDLDIRGAGNLLGAEQSGFIVDIGYETYQKILE
EAIIELKETDFKDVFAEELEKTDRKYVREVTIETDVEMLIPERYVTSIQERLNLYTELDR
LETEDQVEAFQSNLRDRFGRLPAEVKELFEGLRLRWTCKRLGFERVILKNEKLRCYFVEN
PQSAFYESPMFHKIVAFVGAKGKEHGLSFKQSHQHFILVKDGVASLKAARAVLDVIGKNV
G
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgatattaaaccattactcccccatcccgtttcccaatttcattatctttgcacctgtg
aaaaatctacagactttactcgacttatatcggcaggacacccgcacgacgtccattgta
caagaactcaaaaatgaaaccccggcacgggtcaagttactggaattggtgggtgcccaa
ttgagctttgtcattgcgggcgtataccaccaacacccggccaatcacctgattgtggcc
gacaataaagaagaagcggcgtattggcaaaatgacctcgccgcactgtttgggcaaaag
cgcgtgcatttttttccggactctttcaagcagccgctgcgttttgacgaattgaaccaa
accaacgtactggaacgcaccgaaaccatcaacgcggtgagcaatgccgcgcgggggcag
gtgattgtgacgtacccggaggcgctgtttgagcgggtggtatccccggaagtattgagc
aaatctcgcattgaaattgccgtgggtgaaaaactggatcccgagtttttgatggacgta
ttgattgagtacaagtttacccgcgaagaatttgtgtttgaacccggtcaattctctctc
cggggcggcatcatcgatattttttcttttggcaacgacctcccctaccgcgtggagttg
tttgacgatgaggtagaaagcatccgtacttttaatccacttacgcagctttcggcgcaa
aacatcagcagggtctcgattgtccccaacatcaatacccgctttaaacaagaagacaaa
gtatccctgtttcgggtgctcaaggaagatacggtcatctggattcgcgattttcaggtg
ttgatcgatcgtttgcaacgctgctttgaagacgccgaaaagtttgccaaaaccatttcg
attctggacgagggcgaactggccgaagtgttccgcgatcgcgcctttttgttcccaaaa
gacgtggtggaagatgtgcggctgcaccccatcattctgctttccaatgcaccgcagccc
ctggaaagtacggcgcaaatccaatacggaggcaaaccccaacccagttttaaccgcaac
ttcgatttgttgatcgaaaacctgcacgccaacaccgccgcagggctgaccaattacctc
ttcactgaaaaccccaaacaggtcgagcgcttttacgccatttttgaagacctgcgcgcc
aaagtagaattttacccgattgtacagggactacacgagggcttcctggacgctacgctc
aaagtggcttgttataccgatcaccaggtttttgaacgttttcaccgctacaaactgcgg
caaggctacagcaaagaacaagccttgaacctgcgcttgctgcgcgacttgcagccgggt
gattttgtgacccacatcgaccatggcattggccaattcaagggcttacaaaccatcaat
gtgaacggccacgtgcaggaatgtgtgcgactggtgtacaaaaacaacgatctcctgtac
gtcagcatcaactcgttgcacaaaattgccaagtacgtgggcaaggagggcaccccaccc
caactgaacaaattgggctcggatgcctggcggaacctcaaggccaaaaccaagaaaaaa
gtcaaagacattgcgggtgagttgatcaagctctacgcccaacgcaaggcctcaccgggt
tttgcctttgccccggataactacatgcaggtggaactggaatcctccttcatctacgaa
gatacacccgatcagctccaggccactatcgataccaagaacgacatgaccaaaccctac
ccgatggatcgactgatttgtggcgacgtgggttttggcaaaacggaggtggccatccgg
gcagcgtttaaagcgattttggacggaaaacaggtggcggttttggtgccaaccaccatt
ctggcgctgcaacacgccaaaacctttggggatcgcctcaaagatttttcggcaacggtg
gattacgtgaaccgtttccgcaccgctggcgagaaaaaacaaatttttgaacggctccgc
gagggcaaaatcgacctgatcattggtacccaagccttgctcaatcaggaagtgaaattt
aaggacttgggcttgttgatcattgatgaagagcaaaaatttggggtggcctccaaagaa
aagctccgcaacttcaaagtcaatgtagatacgctgacgctaaccgccacgcccatcccg
cgtaccctgcaattttccctaatggccgcgcgggatctctcgatcattcgtacgccaccg
cccaaccgacagcctatccataccgaagtacgcatttttagtgaagacatcatcaaggag
gcgatttattacgaggtaaaccgcggtgggcaggtgttttttgtacacaatcgggtcaaa
aacctggctgaggtagaaatgatgattcgccgtctttgcccagatgtggaagtggcttcg
gctcacggccagatggagtcggataaactggaaaaaaccctggtggatttcatcgacaag
caatacgatgtgctggtatgcaccaacatcattgaaaccggtctggatatttccaacgcc
aatacgatgctcatcaacaacgcccaccagtttggcatgagcgacctgcaccagttgcgg
ggtcgcgtgggtcgcagcaacaaaaaggcgtattgttacctgtttagtccgccgatgtcg
accctcaccagcgatgcccgcaaacgcttgcgcactttggaagagttttcggacctgggc
agcggcttccacatcgccatgcgcgacctcgacatccggggggcgggcaacttgctcggc
gctgagcaaagtggtttcattgtggacattggctacgaaacctaccaaaaaatcctggaa
gaggcgatcatcgagttgaaagaaacggactttaaagacgtattcgccgaagaactcgaa
aaaaccgaccgcaagtacgtacgcgaggtgaccatcgaaaccgacgtggaaatgctgatc
cccgaacgctacgtgaccagcatccaggagcgcctcaatttgtacaccgagctggaccgc
ctggaaaccgaggatcaggtcgaagctttccaaagcaacctccgcgaccgctttggtcgt
ctgcccgcggaggtaaaagaactattcgaaggcctgcgcctgcgctggacctgcaaacgc
ctgggctttgaacgggtgatcctcaaaaatgaaaaactgcgctgctattttgtggaaaac
ccgcagtctgcattttatgaaagtccgatgtttcataaaatcgtggcctttgtgggcgca
aaagggaaggagcatggattgagttttaagcagtcgcaccagcattttatcttggtgaaa
gatggggtggcgagtttgaaggcggctagggcggtgttggacgtgattgggaagaatgtg
gggtga
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