Haliscomenobacter hydrossis: Halhy_4014
Help
Entry
Halhy_4014 CDS
T01491
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hhy
Haliscomenobacter hydrossis
Pathway
hhy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Halhy_4014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhy03021
]
Halhy_4014
03019 Messenger RNA biogenesis [BR:
hhy03019
]
Halhy_4014
Transcription machinery [BR:
hhy03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Halhy_4014
Messenger RNA biogenesis [BR:
hhy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Halhy_4014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
AAA_22
OB_RNB
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AEE51862
UniProt:
F4L5M7
LinkDB
All DBs
Position
complement(5074313..5076400)
Genome browser
AA seq
695 aa
AA seq
DB search
MFDILQLNDMLVPELRELAERLGIQGYRKLNKKELVYKILDYQALAEGSERPAFEPGEDL
DIPASITSREQFQNELYRPDDDEPSVSKSTTPEEPSSTDPADGSEEDDAADRNKRTRRRV
TREELEQQQALTRRDRNMPKLERTRDRNERTEKPERDPERDERGGRVEPQRPTREERPSR
DERPIRDERPSSRDERPSREERPSRDERPTRDDRPSRDERPTRDDRPSRDERPERNERTP
RFEREQRPERNDRDRDRYDRDRDRDRDSRDRDGDRDRDRDRDREPEREREGARFEDAPER
RQPAAEEFDDYSREEEERFDIELDGIIEGEGILEMMPDGYGFLRSADYNYLTSPDDIYVS
PSQIKLFGLRTGDTVCGAIRPPKEGEKYFALLRVSKINGRDPAEIRDRVPFDYLTPLFPT
EKLRLVGAPGSRNIGNRMIDLFTPIGKGQRGLIVAQPKTGKTFLLKDLANAIAKNHPECY
IIVLLVDERPEEVTDFKRSVHAEVVASTFDEPAENHVRVAGIVLEKAKRLVECGHDVVIM
LDSITRLARAYNTVAPASGKVLSGGVEANALHKPKKFFGAARNIEGGGSLTILATALIDT
GSKMDGVIFEEFKGTGNMELQLDRGLSNKRLFPAIDLTKSSTRRDDLLLDKDTLQRMFIL
RNHLSDMKPEEAMEFLRKHMNMSNSNDEFLLSMNG
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgttcgatattttgcaattgaacgacatgttggtgccagaactgagagagctcgccgaa
cgattgggcatccagggctaccgaaaactcaacaaaaaagaactcgtctacaaaattctg
gattaccaggcccttgctgaaggttctgagcgccccgcttttgagcccggagaagatctt
gacatccctgctagcatcaccagcagggaacagtttcaaaatgagttgtaccgaccggac
gatgatgaaccctccgtctccaaatctactacaccagaagaaccatcttctaccgatcct
gccgatggcagtgaagaagatgacgctgctgaccgtaacaaaagaactcgacgcagggta
acccgcgaagaacttgaacaacaacaagcccttacccgtcgcgaccggaacatgcccaag
ctcgaacgcacccgcgatcggaatgaacgcacggaaaaaccggaacgtgatccggaacgc
gatgaacgaggaggacgggtagaaccacaacgtcctactcgcgaggaacgtcccagccga
gatgagcgtcctatccgtgacgagcgtccaagtagccgagacgaacgtcccagtcgggag
gaacgccctagcagggacgaacgacctactcgcgatgatcgcccctccagagacgaacgt
cctactcgtgacgatcgcccttccagagatgaacgtccggaacgcaatgaacgtacgcca
cgttttgaacgcgagcaacgcccggaacgcaacgatcgtgatcgtgatcgttacgaccgc
gatcgggaccgcgacagagacagccgcgatcgggatggcgacagagatagagaccgcgat
cgggatcgcgaaccagagcgcgaacgcgaaggtgcccggttcgaagatgcacctgaacgc
cgccaaccagctgcggaagagtttgacgattacagccgcgaagaagaagaacgtttcgac
attgaactggacggcatcatcgaaggtgaaggcatcctggaaatgatgcccgatggttac
gggttcttgcgttctgcagattacaactatctgacttcgcctgacgatatttatgtttct
ccttcgcagatcaaactttttggcctgcgcactggagatacagtttgtggggccattcgc
ccacccaaagaaggggaaaaatattttgctcttttgcgggtatccaaaatcaatggccgt
gatccagcggaaatccgggatcgtgtaccttttgattacctgacgccgttgttccctacc
gaaaaattgcgcttggttggtgctccgggttccagaaacatcggcaaccgcatgatcgac
ctctttacgccaattggtaaaggccaacggggtttgattgtggcccagcccaaaacgggt
aaaacctttttgctgaaagacctggccaacgccattgccaaaaaccacccggagtgttac
atcatcgtactgttggtggatgaacgcccggaagaagttaccgacttcaaacgcagtgta
catgccgaggttgtagcctctacttttgacgaaccagctgaaaaccacgtgcgggtagcc
ggcatcgtgcttgaaaaagccaaacgcctggtagaatgtggccacgatgtagtgatcatg
ctcgactccattacccgtctggcccgtgcttacaataccgtggcacctgcctctggtaaa
gtactttcgggtggggtggaagccaacgccttgcacaagcctaaaaaattcttcggcgca
gcccggaatattgaaggtggtggatcgttgacgattttggcaaccgccctgattgatacc
ggttcaaaaatggacggcgtgatctttgaagaattcaaaggtacgggcaacatggaatta
cagctggaccgcggtttgtccaacaagcgtctcttcccggccatcgaccttaccaagtcg
agtacccgccgcgacgatctgctcttggacaaagataccttacaacgcatgttcatcctg
cgcaaccacctttcggacatgaagccggaagaagccatggagtttttgcgcaaacacatg
aacatgtcgaacagcaacgacgagtttttgctgtcgatgaacgggtaa
DBGET
integrated database retrieval system
