Haliscomenobacter hydrossis: Halhy_6076
Help
Entry
Halhy_6076 CDS
T01491
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hhy
Haliscomenobacter hydrossis
Brite
KEGG Orthology (KO) [BR:
hhy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hhy03016
]
Halhy_6076
Enzymes [BR:
hhy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Halhy_6076
Transfer RNA biogenesis [BR:
hhy03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Halhy_6076
Prokaryotic type
tRNA splicing ligases
Halhy_6076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AEE53898
UniProt:
F4L2I0
LinkDB
All DBs
Position
7762377..7763780
Genome browser
AA seq
467 aa
AA seq
DB search
MAKIQIRGKELIKMGYPEGPAIGLCINLIPKHYKRHTQAQVDELLQAIIANPSDYAEDAV
LGRIVEALVEPENKDPQIIDLAPQAKPYPIFGAEKIEAGALQQMETAMRLPVTHAGALMP
DAHQGYGLPIGGVLATENAVIPYGVGMDIGCRMCMTIYPLDPQELEAKRSMFKKLLLENT
RFGFGVFDKPMDDPILERAEFREVPKLRSLKTKAWQQIGSSGSGNHFVEFGIVEIMDEPN
EFNLPLGKYLGLMSHSGSRGLGATLAQYYTKLAMETCNLPKQAQHLAWLSLDAEAGQEYW
TAMNLAGDYASACHHQIHHRMAKSLGEKSLAIIENHHNFAWKEILADGKEYIVHRKGATP
AGKGVLGVIPGSMTAPAFIVRGKGFADSINSASHGAGRQMSRRQALGAVTKSDLDKHLRT
HGVELMGGGLDEAPFAYKNIHHVMAAQVELVETIGTFHPKIVRMDGE
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagattcaaatcaggggcaaagaactgatcaaaatgggctacccggaagggcca
gccatcggtctgtgcatcaacctgatcccaaaacactacaaacgacatacccaggcacaa
gttgacgaactcctgcaagccatcatcgccaacccgagcgactatgccgaagatgcggta
ttggggcgtatcgtcgaggcattggtggaaccagaaaataaagatccacaaatcattgac
ctggcgccacaggccaaaccctacccgatttttggggcagaaaaaatcgaagcgggggcc
ttgcagcagatggaaaccgccatgcgtttgcccgtaacacacgcgggtgccctcatgccc
gacgcccaccaaggctacggtctgcccattggcggggtactggctaccgaaaacgcagtg
attccttacggtgtaggcatggacattggttgtcgcatgtgtatgaccatttatccgctc
gacccgcaggagttggaagccaaacgcagcatgttcaaaaaactgctcctggaaaacacc
cgttttggctttggtgtcttcgataaaccaatggacgatccgattctggagcgggccgaa
tttagggaggtacccaagttgcgctcgctgaaaaccaaggcctggcaacaaatcgggtct
tcgggttcgggcaaccacttcgtcgaatttggcatcgtggagatcatggatgagcccaac
gaattcaacctgccattgggcaaatacctgggtttgatgtcgcattccggttcgcgtggc
ttgggcgcaacgctggcgcagtactacaccaaactggccatggaaacctgcaacctgccc
aaacaggcgcaacacctggcctggctgagcctcgacgccgaagctggacaggaatactgg
acggccatgaacctggcgggtgattacgcctcggcttgtcaccaccagatccaccaccgt
atggcgaagtcactgggtgaaaaatcgctggccatcatcgaaaaccaccacaactttgcc
tggaaggaaatcctggccgatggcaaagagtacatcgtacaccgcaagggcgctacgcca
gcgggaaaaggagtattgggcgtgattcctggttcgatgaccgcaccggctttcattgtg
cgcggaaagggatttgcggattcgatcaactcggcttcgcacggcgcgggccgccagatg
tcgcggcgacaagccctgggagcggtcaccaaatccgacctcgacaaacacctgcgtacc
cacggcgtggaattgatgggtggcggcctggacgaggcgccatttgcgtacaaaaacatc
caccacgtgatggccgcacaggtggagttggtggaaacgatcgggaccttccatccaaag
attgtgcgcatggacggcgagtag
DBGET
integrated database retrieval system
