Haliscomenobacter hydrossis: Halhy_6749
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Entry
Halhy_6749 CDS
T01491
Name
(GenBank) helicase domain-containing protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hhy
Haliscomenobacter hydrossis
Pathway
hhy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hhy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Halhy_6749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hhy03019
]
Halhy_6749
03400 DNA repair and recombination proteins [BR:
hhy03400
]
Halhy_6749
Enzymes [BR:
hhy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Halhy_6749
Messenger RNA biogenesis [BR:
hhy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Halhy_6749
DNA repair and recombination proteins [BR:
hhy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Halhy_6749
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF559
Motif
Other DBs
NCBI-ProteinID:
AEE54563
UniProt:
F4L855
LinkDB
All DBs
Position
pHALHY02:97382..101812
Genome browser
AA seq
1476 aa
AA seq
DB search
MHQSTHQSGFILPDLIRQLKTAGIAAGDQIDALLSSVANFQTISSFDLSKRSKDADSLLC
VLHNLIVRGAPTFIPLQIEAELAKHLDCLEDNGSTSECGYRLIEQGNEVLPTCWDALHLI
DPRLTREEALINYHTGEERMDSQAEEHFFFEHIPQYLAEGSGDFLLQLFQTQRSMDSIVG
KKEAGGFWDQRIDFALEFPYQVDEKRGLCLEVDGPHHLDMAQKTLDHRRDEVALKAGYNT
FRFPVGNFGREEHVTQFHKLKAALNHPSIKRFQSNYQNPLYRSAVGRVALQLMLSPMAIA
RIQLVLAKAIIAGALSLEAETWNIAVLEKDVPCAKLAIDNFMETLRQLVGLEKQQQRLPK
IALKVYVTPAFQNFELNRATSLFLDEELSQDETSYDLYIEISTLQRTPMLWRKHNCPSAK
NQVQIFSAYHHHEPISLLFSERIQWRELWDDVSKQPIPAAESALTYFLQNIFRKKGFRPG
QIPILNWAMQNQSVIGLLPTGGGKSLTYQIAGLLQPCMTLVVDPIKSLMKDQVDGLKRMG
IHRTVYINSSLSFKAKQQAQQKMRTGKALFAFVSPERLQMDLFRALLKGMFDHGIYFAYG
VIDEVHCVSEWGHDFRTSYLFLGKNLLEHCRTKTGKVTLFGLTATASYDVLVDVQRELSG
NEPRHEIPDERIIRHETTIRDEVQFVVDKIEIEDEQLHEIIATSTPQAFAFNINTAIGKL
KQERSKFHIEHAADNLSRFLNHPEKVVNADLLQLIYEDSQIPSVESVLQKIRLEELALQN
FWLNEGLNAGIIFTPHRKKAFGVEGVQERLALETNVRLGTFMGVNDEDPLVAAEVEQNNL
HNQDAFLANQLDVMVATKAFGMGIDKSNIRLAIHNNYPGSIESFVQEAGRVGRDGKMAVS
VILFNEKKYQHPNTTEAIDPDFEKQLFFHHLSFKGTIKEKAVLAELLTQIIFPTKSNNAL
LCAGILPEEKEVSCTVLLSAFGGDHYLWLNDNSGETYGNIRWSNGQINTNNATVEANLAL
QAMQQLYSQMEESGFLKQPVVDFQNWLNKANPQTPEDGIEKHLVNLEEGASISITIPFQN
DHHQIYRQILHLCGPMDPHLNTEIISRNIQSNGRQFLEKLAVILHWATGLDAKILLGANQ
LKLSAEQFLQRLELQLNSIREKSDTEKALYRLSLIGVIDDYTVDFRTKTFTIKVTKKPVQ
EYKNHLRNYLSKFYTTRRVEEILEELPSRKGASDIQRILNFLIEFLYEEIAKKRFEAINA
MRALCTLGYEGGNIEIKSFIHLYFNSKYAQKEYYLTLDPVSASAYRKLFKTETDNVSLNH
WTEGGKNADIDLVFDYMQLMLDDYNGAQINNLKHLRGACTRLLIVYPDNYVLRLLRAYAM
ILLSERQAKGRIPTELALSDLETGFLQIYQEKSSQKALWEILQAFNTAILHQIDASNTSI
RNEIEAIFEQVLLLIHSEWTKTFTQTLSSQLNHIMP
NT seq
4431 nt
NT seq
+upstream
nt +downstream
nt
atgcatcaatcaacccatcaaagcggatttatactccctgatttaattcgacagttaaaa
acagctggcattgcagctggagatcaaatcgatgcattgttgtcttcggttgcgaacttt
cagaccatctcaagttttgacctgtcgaagcggtcgaaagacgccgacagcctgctctgc
gtattgcacaacctcattgtaagaggagcgcctacgttcattccgctacaaatagaagca
gagttagccaagcatcttgattgtctggaagacaacggatctaccagcgaatgtggctat
cgccttatcgaacaagggaacgaagttttgccaacctgttgggatgcactgcaccttatt
gacccccggcttacccgtgaggaggcgcttatcaactaccataccggtgaagagcgcatg
gatagtcaggcagaagagcacttcttctttgaacacattcctcaatatttagcagaaggt
tcgggagattttttgttgcagttgttccaaactcagcgcagcatggactcaatagttggg
aaaaaagaagctggtggtttttgggaccaacgcatagattttgctctggaatttccgtac
caagtcgatgaaaaaagagggctgtgcctggaagtagatgggcctcatcacctggacatg
gcccaaaaaacgcttgatcaccgcagagatgaagtagccttaaaagcagggtacaatacc
tttcgatttcccgttggaaactttggcagagaggaacatgtcacgcaattccacaagctc
aaagcagcgctcaatcatccttccataaaaagatttcaatccaactaccaaaacccactt
taccgttcagccgtagggcgcgtcgcattacaattgatgctaagtcctatggccattgct
agaatacaactggtgttggcaaaagcaatcattgccggagcactatccctggaagctgaa
acctggaacatagctgtacttgaaaaagacgtcccctgcgccaagttggccattgacaac
ttcatggaaacgctgcggcaactggttggcttagaaaaacagcaacaaaggctcccaaaa
atagcgctaaaagtatacgtgacgccagcgtttcagaactttgaactaaaccgggcaacc
agcctattcctggatgaggaacttagccaagatgaaacatcctacgatttgtatattgaa
attagcaccctacaacgtacacccatgctttggcggaagcacaactgcccgagcgcaaaa
aatcaggttcagattttctctgcttaccatcatcatgaacccatttcactattgtttagc
gaacgcatccaatggagggaactatgggacgatgtatcaaagcaacccataccagcggcg
gagagcgcactgacctattttctacaaaacatcttccgcaagaaaggctttcggccaggc
cagattccaatattgaattgggccatgcaaaatcaaagcgtcattggtttgttgcccacc
ggtggaggcaaatcattgacctaccaaattgcgggactattgcaaccctgcatgaccctg
gttgtcgatccgatcaaatcattgatgaaagaccaggtcgacgggttgaaaagaatgggc
attcaccgtaccgtgtacatcaattcaagtttaagcttcaaagcaaagcaacaagcgcag
caaaaaatgcgcacaggaaaagccctattcgcctttgtcagtcctgaacgcttacaaatg
gacctattcagggcgttgctaaaaggaatgttcgaccatggaatctatttcgcctatgga
gtcatcgacgaagtacactgtgtttccgaatggggccatgacttccgaacctcctatcta
tttctgggaaaaaacctgctagagcattgtcgcactaaaacaggaaaagtgaccctattt
ggattgaccgccaccgcctcctacgacgtattggtcgatgtacaaagagagctctctggc
aacgaacccaggcatgagatacccgatgagcgcatcatccggcatgaaactaccattaga
gatgaagttcagtttgtggtcgacaaaatagaaatagaggatgagcagctgcacgaaata
atcgcaacttccacaccacaggcctttgcctttaatatcaacaccgccataggaaagtta
aaacaggagcgcagcaagtttcatattgagcacgcagcggataatttgtctcggtttctc
aatcaccctgaaaaagtagtcaacgcggacctattgcaattgatctatgaagacagccaa
atacccagtgtagagagtgtacttcaaaaaataaggcttgaagagttagcgcttcaaaat
ttctggctcaatgaaggtttgaatgctggcatcatttttacgccgcaccgaaaaaaagca
tttggcgttgagggcgtacaagagcggctcgccctggagacaaatgttcgacttggtacg
tttatgggcgtcaacgatgaagacccattggttgcggctgaagttgaacaaaacaacctg
cataatcaagacgcatttctggccaaccaacttgacgtaatggtggccacgaaagctttt
ggaatgggcatcgacaaaagcaacatccgattggcgatacacaacaactaccctgggtca
attgagagttttgtacaagaagccggtcgggtaggacgcgatggcaaaatggcagtttcg
gtgatcctttttaatgagaaaaaataccagcaccccaacacaacggaggcaattgacccc
gattttgaaaagcagctttttttccaccacctaagttttaaaggtactatcaaagaaaaa
gcggtgctggcagaattgctaacgcaaattatctttccgacaaaaagcaacaatgcgtta
ctgtgcgcaggtattttaccagaagaaaaagaggtttcatgcacagttctactatcggca
tttggcggcgaccattatttgtggttgaacgacaacagcggggaaacctatgggaacata
aggtggtctaacgggcagattaatacaaacaacgccacggtagaggcaaatctggcctta
caggcaatgcaacaactgtacagtcaaatggaagaaagtggttttcttaaacagcccgtt
gttgactttcaaaattggctgaataaggccaatccacaaacgccagaagacggcattgaa
aaacatctggtaaacttggaggaaggcgcatccatttccataaccattccctttcagaac
gaccaccatcaaatttatcggcagattttgcacctgtgtggccccatggatccgcacctg
aatacagaaataatcagcagaaatatccaaagcaacggtcgtcaatttttagaaaaattg
gcagtcattctccattgggcaactggtttggacgcaaaaatcctgcttggtgcgaatcaa
ttgaaactatcagctgaacaatttctgcagcggcttgaattacagctcaactctatacgc
gaaaagtccgataccgaaaaagcattgtaccggctctcgctcattggggtcattgatgat
tacaccgtagattttcggaccaagacctttaccattaaagtgacaaaaaaacctgtccag
gaatacaaaaaccaccttcggaactacctcagtaaattttacaccaccagaagagtcgag
gaaatcctggaagagcttccaagtcgaaaaggcgcatccgatattcaacgcatcctcaat
ttcctcattgagttcctttatgaggaaattgccaaaaagcgctttgaggcgatcaatgcc
atgcgtgcgttgtgtacccttggatatgaaggagggaacatcgaaataaaaagctttatc
catctttatttcaactccaagtacgcccaaaaagaatattacctgaccttagacccagta
agtgcctcggcctaccgaaaattattcaaaacagaaacggacaatgtttcgctgaaccat
tggacagaaggaggaaaaaatgcggatatcgacctggtttttgactacatgcagttgatg
ttagacgactacaacggagcacaaatcaacaaccttaaacacctgcggggagcctgtacc
cgtttgttgattgtatacccggacaattacgttttgcggctactgcgggcttacgccatg
attctactctcagagcgccaggcaaaaggaaggatacccaccgaacttgcactatccgac
ttagaaacaggcttcctccagatctaccaagaaaaatccagtcaaaaggcgttgtgggaa
attttgcaagcattcaataccgcaatacttcatcaaatcgacgccagcaatacctcgatt
cggaacgaaattgaagccatatttgaacaagtgctgttgttgatacacagcgaatggacc
aaaacctttacacaaaccctatcctcacagcttaatcacatcatgccatga
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integrated database retrieval system
