Haemophilus haemolyticus: NCTC10839_00631
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Entry
NCTC10839_00631 CDS
T06216
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hhz
Haemophilus haemolyticus
Pathway
hhz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hhz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC10839_00631 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hhz03021
]
NCTC10839_00631 (rpoC)
03400 DNA repair and recombination proteins [BR:
hhz03400
]
NCTC10839_00631 (rpoC)
Enzymes [BR:
hhz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC10839_00631 (rpoC)
Transcription machinery [BR:
hhz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC10839_00631 (rpoC)
DNA repair and recombination proteins [BR:
hhz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC10839_00631 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
SQH96762
UniProt:
A0A0M3FX03
LinkDB
All DBs
Position
1:635042..639292
Genome browser
AA seq
1416 aa
AA seq
DB search
MKDLVKFLKAQSKTSEDFDVIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKS
LPSRIGLLLDMPLRDIERVLYFEMYIVTEPGMTDLERGQLLTEEQYLDAEDRWQDEFEAK
MGAEAIQDLLKGMDLEVECEKLREELQETNSETKRKKITKRLKLLEAFVQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLHLHQCGLPKKMALELFRPFIYAKLESRGYATTIKAAKKMVEREDAIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNVLSPANGDPIIVPSQDVVLGLYYMTREKVNGKGEGMLLQDPREAEKAYRT
GEAELHSRVKVRITEYVKNEAGEFDAKTTLTDTTIGRAILWMIAPQGMPYSLFNQTLGKK
AISKLINEAYRRLGLKEAVMFADQIMYTGFAYAARSGSSVGIDDMEIPAKKYEIISAAEE
EVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSQEEVINREGNPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIVEDDCGTHEGLVMTPLIEGGDEKVPLRELV
LGRVAAEDILKPGTEEVLIPRNTLLDEKLCDVLDANSVDSVKVRSVVTCDTDFGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSVQVKNTGTLH
LMNAKFVTNDEGKLVLTSRNTELTITDAFGRTKEHYKVPYGAVLSKGDGQDVTAGETIAN
WDPHTMPVVSEVSGFVKFVDIIDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPTIK
LVDANGNDIFLPETDVLAQYFLPGKAIVSLDDGAAVKVGEPLARIPQESVGTKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLLITPAEGETYEEMIPKWRQLNVFE
GEMVQRGDVISDGAETPHDILRLRGVRAVTEYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKAVITKAYDSEFLEGEQVEVARVKIVNRQREAEGKPPVEFERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHQNRHKHRLVDDVVA
KLSEEDEAAIADEFVMTADDASANLAEMLNMADDAE
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttagttaagtttttaaaagcacagtcaaaaaccagtgaagattttgatgtg
attaaaattgggttagcttccccagatatgatccgttcttggtcatttggtgaagtgaag
aaacctgaaaccattaactaccgtacattcaaacctgaacgtgatggtcttttctgtgca
cgtatcttcgggcctgtaaaagattacgaatgtttatgtggtaaatataaacgtttaaaa
caccgtggtgtgatttgtgaaaaatgtggtgttgaagtcactcaaactaaagttcgtcgt
gaacgtatgggccacattgaacttgcatcgccagttgcacatatttggttcttaaaatca
ttgccgtctcgtattggtttacttttagatatgccattgcgtgatattgaacgtgtactt
tattttgaaatgtacatcgtgaccgagccaggtatgacggacttagagcgcggtcaatta
ttaacagaagaacaataccttgatgctgaagatcgttggcaagatgaattcgaagcgaaa
atgggtgctgaagcgattcaagatctcttaaaaggtatggatcttgaagttgaatgtgaa
aaattacgtgaagaattacaagaaactaactctgaaactaaacgtaaaaaaatcactaaa
cgcttaaaattattagaagcatttgttcaatctggtaataaaccagaatggatggtaatg
actgtattaccagttcttccaccagatttacgtccattagtaccgcttgatggtggtcgt
tttgcgacttcagatctgaacgatttatatcgtcgtgtgatcaaccgtaacaaccgttta
aaacgtttattagatttaattgcgccagatattattgtgcgcaacgaaaaacgtatgtta
caagaatctgttgatgcgttattagataatggtcgtcgcggtcgtgcaattacgggctct
aaccgtcgtccgttaaaatcattggcagatatgatcaaaggtaaacaaggtcgtttccgt
caaaacttattaggtaaacgtgttgactattctggtcgttctgtaatcactgttggtcca
tacttgcacttacaccaatgtggtttacctaagaaaatggccttggaattattccgtccg
tttatctacgctaaattagaaagccgtggttatgcaacgacaatcaaagcggctaagaaa
atggttgagcgtgaagatgcgatcgtttgggatattcttgcagaagttattcgtgaacac
ccaattctattgaaccgtgcgccgacacttcaccgtttgggtatccaagcgtttgaaccg
atcttaatcgaaggtaaagcgattcaattacacccactcgtttgtgcggcgttcaatgcg
gacttcgatggtgaccaaatggcggtacacgttccattaacgcttgaagctcaattagaa
gctcgtgcgttaatgatgtcaaccaacaacgttctttcgccagcaaacggtgatccgatt
atcgttccatcacaagacgtggtattaggtctttactatatgacccgcgaaaaagtgaac
ggtaaaggcgaaggtatgttattgcaagatcctcgcgaagctgaaaaagcatatcgtaca
ggcgaagcagaattacattctcgcgtgaaagtacgtattactgaatatgtgaagaatgaa
gctggcgaatttgatgcgaaaaccacgcttactgatacaactatcggtcgtgcgatttta
tggatgattgcaccacaaggtatgccttattcattgttcaaccaaacattaggtaaaaaa
gccatttctaaacttattaacgaagcttatcgtcgtttaggtttaaaagaagcggtaatg
tttgctgaccaaattatgtataccggttttgcttatgcggcacgttctggttcatcagtt
ggtattgatgatatggaaattccagcgaagaaatatgaaattatttctgcagcagaagaa
gaagtggcagagatccaagagcaattccaatcaggtcttgtgactgcaggcgaacgctat
aataaagtaatcgatatttgggccgcagcgaatgagcgcgtagcgaaagcgatgatggaa
aacttatctcaagaagaagtcatcaatcgcgaaggtaatcctgaaaaacaagcatccttt
aacagtatctttatgatggctgattctggtgcgcgtggttctgcagctcagattcgtcag
ttagcaggtatgcgtggtttgatggcgcgtccagatggttcgatcatcgaaactccaatt
acggcgaacttccgtgagggtttgaacgtacttcagtactttatttcaacccacggtgcg
cgtaaaggtttggcggataccgcattaaaaacagcaaactcaggttacttaactcgtcgt
ttagttgacgtagcacaagacttagtgatcgtagaagatgactgtggtacgcacgaaggc
ttagtcatgaccccattaatcgaaggtggtgatgaaaaagttccacttcgtgaattagtg
ttaggtcgtgtagctgcagaagatattttaaaaccaggtacagaagaagtattaattcct
cgtaacacgttattagatgaaaaactctgtgatgtgttggatgcaaactctgtagacagc
gtaaaagtacgttctgttgtaacttgtgatactgattttggtgtatgtgcgaaatgttat
ggtcgtgatcttgctcgtggtcacctcatcaaccaaggtgaagcagtaggtgttatcgct
gctcaatctatcggtgagccgggtacacagttaaccatgcgtacgttccatatcggtggt
gcggcatctgcggcagcaaaagaatcgagtgtacaagttaaaaacactggtacattacat
ttaatgaatgcgaaattcgttactaatgatgaaggtaaattagtattaacatctcgtaat
actgaattaactattaccgatgcatttggtcgtactaaagaacactataaagtgccttac
ggtgcggtgttaagcaaaggtgacgggcaggatgtaacagcaggcgaaactatcgcaaat
tgggatccacatacaatgccagttgtatctgaagtatctggttttgtgaaattcgttgat
attattgatggcttaactgtaacgcgtcaaactgatgaattaacaggtttatcatcaatc
gtggttcaagatgtgggtgaacgtgctactgctggtaaagatttacgtccaaccattaaa
ttggttgatgcaaatggcaacgatattttcttacctgaaactgatgttcttgcgcagtat
ttcttaccgggtaaagcaatcgtaagtttagacgatggcgcagcagtaaaagtgggtgaa
ccattagcacgtattccgcaagaatctgtgggtacgaaagatattaccggtggtctacca
cgcgttgcagatttatttgaagcacgtaaaccaaaagaaccagctatcttggctgaaatt
tctggtatcgtgtctttcggtaaagaaaccaaaggtaaacgccgtttattaattactcct
gcggaaggcgaaacttacgaagaaatgattccaaaatggcgtcagctcaacgtatttgaa
ggtgaaatggtacaacgtggtgacgtaatttctgatggtgctgaaacaccacatgatatt
ttacgtttacgtggcgtgcgtgcagtaactgaatacattgtgaacgaagtacaagatgtt
taccgcttacaaggggtaaaaatcaacgataaacatatcgaagttatcgttcgtcaaatg
ttacgtaaagcggtaattactaaagcttacgactcagaattcctagaaggggaacaagtc
gaagtcgctcgcgtgaaaatcgttaaccgtcaacgtgaagcagaaggcaaaccaccagtt
gagtttgagcgcgaattattgggtatcaccaaagcgtctcttgcgactgaatcctttatc
tctgcagcatcgttccaagaaacaactcgtgttcttaccgaagcagcagtggcaggtaaa
cgtgatgaattacgtggcttgaaagagaacgtaattgtgggccgattaatccctgcgggt
acaggttttgcgtatcatcaaaatcgtcacaaacatcgtttagttgatgatgtcgtagcg
aaattatctgaagaagatgaagctgctatcgctgatgaatttgtcatgactgcagatgat
gcaagtgcaaacttagccgaaatgcttaacatggcagatgatgcggaataa
DBGET
integrated database retrieval system
