Haemophilus haemolyticus: NCTC10839_01677
Help
Entry
NCTC10839_01677 CDS
T06216
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hhz
Haemophilus haemolyticus
Pathway
hhz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hhz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC10839_01677 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhz03400
]
NCTC10839_01677 (mfd)
Enzymes [BR:
hhz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC10839_01677 (mfd)
DNA repair and recombination proteins [BR:
hhz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NCTC10839_01677 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
UB2H
SecA_DEAD
RecG_dom3_C
DUF6007
Motif
Other DBs
NCBI-ProteinID:
SQH97754
UniProt:
A0A2X4UIK7
LinkDB
All DBs
Position
1:complement(1708796..1712278)
Genome browser
AA seq
1160 aa
AA seq
DB search
MRQFLYKIGALFIFMKTAFFQPDIPTQSNDHKILGNVLPGADALAISEIAEQNQNLTVVV
TKDTRSAVRLSRVLSELSSQNVCLFPDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGI
FLLPISTLMQRLCPPQYLQHNVLLIKKGDRLVIDKMRLQLESAGYRAVEQVLEHGEYAVR
GALLDLFPMGSAVPFRLDFFDDEIDSIRTFDVDTQRTLYEISSINLLPAHEFPTDDKGIE
FFRAQFRETFGEIRRDPEHIYQQISKGTLISGIEYWQPLFFSEMATLFDYLPEQTLFVDM
ENNQMQGERFYQDAKQRYEQRKVDPMRPLLSPEKLWLNVDEVNRRLKSYPRITFKAEKVR
SSVRQKNLPVVALPEVTIQSQQKEPLGQLRQFIEHFKGNVLFSVETEGRRETLLDLLSPL
KLKPKQIQSLEQAENEKFSLLVSSLEQGFIIEQSLPVAIIGEANLLGERVQQRSRDKRKT
INPDTLVRNLAELKIGQPVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYANESKLYVPVT
SLHLISRYVGGSDESAPLHKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREAKKGFAFK
YDREEFQQFSATFPFEETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFL
AVMNHKQVAVLVPTTLLAQQHHENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKV
DILIGTHKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLN
MAMNGIRDLSIISTPPARRLSIKTFVRQNDDLVVREAILREILRGGQVYYLHNDVASIEN
TAEKLTALVPEARVIVGHGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTII
IERADHFGLAQLHQLRGRVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFI
LATHDLEIRGAGELLGNEQSGQIESIGFSLYMELLDAAVKALKEGREPSLEELTQQQADI
ELRVPALLPDDYLGDVNMRLSFYKRIAAAESKSELDELKVELIDRFGLLPDATKNLLQIA
ELHLLVEPLKVVRIDAGIQGGFIEFSPKAQVNPDKFIQLIQKEPIVYRFDGPLKFKFMKD
LSDNKVRLEFVVDLLKAIAS
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgcgtcaatttttatacaagattggcgcattatttatatttatgaaaacggcttttttc
caacctgatattcctacccaatccaatgatcacaaaattttaggcaatgtattaccaggc
gctgatgcattggcgatcagtgaaattgcagagcaaaatcaaaatttaaccgtagtggtg
acaaaagatacgcgaagtgcggtgcgtttatcacgtgttttatcggaattaagcagccaa
aatgtatgcctttttcctgattgggaaaccttaccttacgataccttttcccctcatcaa
gaaattatttcctctcgtttaagtgcgcttttccatttacaaaatgcgaaaaaaggcatt
ttcttattgccgatttcgacattaatgcaacgtctctgcccgccacaatatttacaacac
aatgtgcttctgattaaaaaaggcgatcgcttggtcattgataaaatgcgcttacaatta
gaatcagcgggctatcgtgctgtggagcaagtattagaacatggtgaatacgctgttcgt
ggagccttgttggatcttttcccaatgggaagtgcggtgccttttcgtctcgattttttt
gatgatgaaattgattcgattcgcacttttgatgtggatacgcaacgcactctttatgaa
attagctcaattaatcttttgccggctcacgaatttccaacggatgataaagggattgaa
tttttccgtgcacaatttcgtgaaacctttggtgaaattcgccgagatcctgaacatatt
tatcagcaaatcagtaaaggtaccttgatttctggtattgaatattggcagccacttttc
ttttctgaaatggcgactttgtttgattatttgccagaacaaacgctgtttgtggatatg
gaaaataaccaaatgcaaggtgagcgtttttatcaagatgcaaaacagcgttatgaacaa
cgtaaagtggatccaatgcgtccgcttttatcgcccgaaaaattatggcttaatgtagat
gaagtcaatcgccgattgaaatcttatccacgcattacatttaaagcggaaaaagtgcgg
tcatcggtacgccagaaaaatttacctgttgtcgctttaccagaagtgactattcaatcc
cagcaaaaagaaccattgggacaattacgtcaatttattgagcattttaaaggaaatgta
ctgttttcggtggagacggaagggcgccgagagacgttgcttgatttgctttcaccgtta
aaactcaagccaaaacaaattcaatccttggaacaggctgaaaatgaaaaatttagcttg
ttagttagttctcttgaacaagggtttattattgaacaatcgcttcctgttgcgattatt
ggcgaagctaatttacttggcgaacgtgttcaacaacgttctagagataaacgtaaaacg
attaatcctgacacgcttgtacgcaatcttgccgagctgaaaatagggcagccagttgtg
catcttgatcacggtgtagggcgttatggcggtttggtcaccttagatacaggcggcatt
aaagcagaatatttgctgctaaattatgcaaatgaatcaaaactttatgtgcccgttact
tcattacatctgattagccgttatgtcggtggttctgatgaaagcgcaccattacataaa
ttaggtaacgaggcttgggcgaaatcgcgccaaaaagcagcggagaaaattcgtgatgtg
gcggccgagttattagatgtttacgcacaacgtgaagcgaagaaaggctttgcctttaaa
tatgatcgtgaagaatttcagcaattttccgcaacttttccttttgaagaaacctacgat
caggaaatggcaattaatgcggtaatttcagatatgtgtcagccaaaagcaatggatcgc
cttgtttgcggtgatgtaggttttggtaaaactgaagtggcaatgcgcgcggcctttttg
gctgtgatgaatcataaacaagttgcagtgctagtgccaaccacactgttagcccaacag
catcatgagaattttaaagatcgttttgcgaatttgcctgtgaacgtagaagtgttatca
cgtttcaaaactgcaaaagaacaaaaacaaattctggaaaaccttgcagaaggcaaagtc
gatatattgattggtacccataaattaattcaatcagatgtcaaatttaacgatcttggc
ttgttgattattgatgaagaacaccgttttggtgtggggcaaaaagagaaaatcaaacag
ctccgtgcgaatattgatattcttacgctaacggcaacgccaattccgcgtacgctcaat
atggcaatgaatggtattcgtgatctgtccattatttctacacctcctgctcgccgatta
agtattaaaaccttcgtccgccagaatgacgatcttgttgtacgagaagcgattttgcgt
gaaatcttacgtggtgggcaagtttattatctccataatgatgtcgcaagcattgaaaat
acagcagaaaaactcaccgcacttgtgcctgaagcacgagtaattgtggggcacggacaa
atgcgagaacgtgagttagaacgtgtgatgagtgatttttatcatcagcgttataacgtc
ttagtttgttcaaccattatcgaaacgggtattgatgtgccaacggcaaataccattatt
attgaacgagcggatcattttggattagctcagttgcatcaattacgtggacgagttggg
cgttcacatcatcaggcttatgcttatttgcttacgcccccacctaaaatgatgacaaaa
gatgccgaacgccgtctagatgcgttagaaaatcttgataaccttggggctggttttatc
ttagcaacccacgatttagaaattcgtggcgctggcgaattactcggaaacgaacaaagc
ggacaaattgaaagcatcggtttttcgctttatatggaattattggatgcggcggttaaa
gcgttaaaagaagggcgagaaccatcattagaagaattgacgcaacaacaagcggatatt
gaattgcgtgtgcctgctttattgccagatgattatctaggtgatgtgaatatgcgttta
tccttttataaacgtattgctgcagcagagagtaaatcagagttggacgagttaaaagtt
gagttaatagatcgattcggattattgcctgatgcgacaaaaaatctactgcaaattgca
gaattgcatttgttggttgagccgttgaaagttgtgcgaattgatgcaggaatacaaggc
ggttttattgagttttcaccaaaagcacaagtgaatccagataaatttattcaattaatt
caaaaagaacctattgtgtatcgatttgatggcccattgaaatttaagtttatgaaagat
ctatctgataacaaagtgcggttagaatttgtggtagatttgttgaaagcaattgcttca
taa
DBGET
integrated database retrieval system
